Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3728

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3727: 12095 - SMART-Leucine rich repeat, ribonuclease inhibitor type-SM00368,SUPERFAMILY--SSF52047, at 439950 to 441597 12095 mRNA_3728: 12096 - K11142 LAP3 cytosol aminopeptidase, at 441671 to 443858 12096 mRNA_3729: 12097 - K15280 SLC35C2 solute carrier family 35, member C2, at 444211 to 445530 12097

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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441,534 + -1.0
441,537 - 0.6
442,147 + 12096 mRNA_3728 0.22 0.1
443,149 - 12096 mRNA_3728 0.68 -0.1
443,150 - 12096 mRNA_3728 0.68 0.1
443,258 - 12096 mRNA_3728 0.73 0.5
443,310 - 12096 mRNA_3728 0.75 -3.4
443,441 + 12096 mRNA_3728 0.81 -1.0
443,572 - 12096 mRNA_3728 0.87 -0.3
443,750 - 0.9
443,791 - -0.8
443,836 - -1.0
443,837 - -0.1
443,853 + 1.1
443,880 - -0.8
443,885 + -0.7
443,898 - -0.1
443,903 - -0.9
443,903 - -0.1
443,905 + -0.2
443,911 + 1.0
443,919 + -0.6
443,920 + -0.8
443,932 - -0.7
443,933 - -0.4
443,961 + -2.3
443,962 - 0.6
443,966 - 0.2
443,973 + -0.0
444,026 - -0.3
444,032 - 0.6
444,053 - 2.2
444,055 + 2.4
444,070 + -0.3
444,081 - 0.3
444,149 + 0.9
444,158 + 0.0
444,177 + -0.2
444,186 + 0.9
444,200 + -0.5
444,218 + 1.4
444,331 + 1.3
444,620 - 12097 mRNA_3729 0.31 -0.4
444,628 + 12097 mRNA_3729 0.32 0.2