Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3706

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3704: 12072 - Hypothetical Protein, at 399058 to 399573 12072 mRNA_3705: 12073 - Hypothetical Protein, at 399729 to 400196 12073 mRNA_3706: 12074 - KOG1550 Extracellular protein SEL-1 and related proteins, at 400186 to 402852 12074 mRNA_3707: 12075 - KOG2846 Predicted membrane protein, at 403479 to 405078 12075

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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399,549 - 0.1
399,572 + -2.3
399,691 - 0.8
399,702 + 2.8
399,715 + -0.5
399,839 - 12073 mRNA_3705 0.24 -0.2
399,872 - 12073 mRNA_3705 0.31 -0.5
399,874 + 12073 mRNA_3705 0.31 0.1
399,903 - 12073 mRNA_3705 0.37 -0.4
399,990 - 12073 mRNA_3705 0.56 1.0
400,000 - 12073 mRNA_3705 0.58 0.3
400,292 - 0.8
400,296 + 1.4
400,525 + 12074 mRNA_3706 0.13 1.3
400,769 + 12074 mRNA_3706 0.22 -0.2
400,992 - 12074 mRNA_3706 0.30 -0.0
401,166 + 12074 mRNA_3706 0.37 -0.1
401,413 - 12074 mRNA_3706 0.46 1.2
401,622 + 12074 mRNA_3706 0.54 1.7
401,626 - 12074 mRNA_3706 0.54 0.1
401,713 - 12074 mRNA_3706 0.57 0.6
401,912 - 12074 mRNA_3706 0.65 0.6
401,922 + 12074 mRNA_3706 0.65 -0.3
402,056 + 12074 mRNA_3706 0.70 0.4
402,158 - 12074 mRNA_3706 0.74 -1.9
402,180 - 12074 mRNA_3706 0.75 0.4
402,196 + 12074 mRNA_3706 0.75 -2.5
403,035 - 0.9
403,077 + 1.0
403,079 + -0.3
403,163 + -0.1
403,204 + -0.2
403,215 - 0.1
403,226 + 0.2
403,322 + 0.4
403,344 - 2.2
403,350 - -1.8
403,357 - -1.1
403,358 - 0.3
403,359 - -0.7
403,383 + 0.1
403,384 + 1.3
403,529 - -0.6