Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3679

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3678: 12046 - K14530 RPP40 ribonucleases P/MRP protein subunit RPP40, at 324600 to 326289 12046 mRNA_3679: 12047 - K02370 EXTL3 alpha-1,4-N-acetylglucosaminyltransferase EXTL3, at 326327 to 327835 12047 mRNA_3680: 12048 - Hypothetical Protein, at 328001 to 330038 12048

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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326,123 - 2.4
326,454 - 0.5
326,456 - -0.2
326,464 + 0.4
326,779 + 12047 mRNA_3679 0.30 -0.2
326,913 - 12047 mRNA_3679 0.39 2.2
327,068 + 12047 mRNA_3679 0.49 -0.3
327,069 - 12047 mRNA_3679 0.49 -0.7
327,082 + 12047 mRNA_3679 0.50 1.1
327,183 - 12047 mRNA_3679 0.57 -1.5
327,201 + 12047 mRNA_3679 0.58 0.2
327,319 + 12047 mRNA_3679 0.66 -2.0
327,325 + 12047 mRNA_3679 0.66 2.5
327,609 - 12047 mRNA_3679 0.85 0.0
327,622 - 12047 mRNA_3679 0.86 -0.3
327,623 - 12047 mRNA_3679 0.86 -1.2
327,628 - 12047 mRNA_3679 0.86 1.5
327,650 + 12047 mRNA_3679 0.88 -1.7
327,653 - 12047 mRNA_3679 0.88 -0.2
327,656 + 12047 mRNA_3679 0.88 -2.1
327,768 - 2.2
327,772 - 1.2
327,788 + -0.7
327,788 + 0.1
327,913 - -1.1
327,925 - -0.3
327,938 - -0.5
328,125 + -2.5
328,655 - 12048 mRNA_3680 0.32 -0.8
328,659 + 12048 mRNA_3680 0.32 0.3