Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3655

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3654: 12022 - K11204 GCLC glutamate--cysteine ligase catalytic subunit, at 269358 to 271210 12022 mRNA_3655: 12023 - KOG1721 FOG Zn-finger, at 271428 to 272912 12023 mRNA_3656: 12024 - Hypothetical Protein, at 272943 to 273266 12024 mRNA_3657: 12025 - Hypothetical Protein, at 273428 to 273670 12025

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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270,444 - 12022 mRNA_3654 0.59 -0.9
270,485 - 12022 mRNA_3654 0.61 -0.4
270,486 + 12022 mRNA_3654 0.61 -1.6
270,492 + 12022 mRNA_3654 0.61 -0.6
270,497 - 12022 mRNA_3654 0.61 0.4
270,523 - 12022 mRNA_3654 0.63 0.4
270,626 - 12022 mRNA_3654 0.68 -0.4
270,646 + 12022 mRNA_3654 0.70 -0.3
270,650 + 12022 mRNA_3654 0.70 -0.0
270,655 + 12022 mRNA_3654 0.70 0.3
270,811 + 12022 mRNA_3654 0.78 0.4
270,911 - 12022 mRNA_3654 0.84 -0.1
270,934 - 12022 mRNA_3654 0.85 -0.3
271,076 - -0.8
271,104 - 0.5
271,116 + -0.2
271,177 - 0.2
271,177 - 0.4
271,248 - -1.9
271,249 + -0.4
271,252 - -0.5
271,254 + -1.4
271,270 + 0.4
271,379 - 0.3
271,405 - 0.0
271,428 + -0.6
271,459 - 0.9
271,552 + -0.8
271,711 + 12023 mRNA_3655 0.19 0.0
271,836 - 12023 mRNA_3655 0.27 0.0
271,837 + 12023 mRNA_3655 0.28 -1.4
272,009 - 12023 mRNA_3655 0.39 -0.2
272,262 - 12023 mRNA_3655 0.56 -1.0
272,438 - 12023 mRNA_3655 0.68 1.1
272,484 + 12023 mRNA_3655 0.71 0.1
272,705 - 12023 mRNA_3655 0.86 -0.1
272,706 + 12023 mRNA_3655 0.86 -0.4
273,041 - 12024 mRNA_3656 0.30 -0.9
273,573 + 12025 mRNA_3657 0.60 -0.7
273,827 + -1.1