Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3653

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3652: 12020 - K17278 PGRMC1_2 membrane-associated progesterone receptor component, at 259462 to 260271 12020 mRNA_3653: 12021 - KOG2437 Muskelin, at 260397 to 263923 12021

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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259,431 - 0.7
259,459 + -0.6
259,576 - 12020 mRNA_3652 0.14 0.6
259,600 + 12020 mRNA_3652 0.17 -1.1
259,727 + 12020 mRNA_3652 0.33 -1.5
259,736 - 12020 mRNA_3652 0.34 -2.3
259,766 + 12020 mRNA_3652 0.38 0.2
259,915 + 12020 mRNA_3652 0.56 -0.1
260,019 + 12020 mRNA_3652 0.69 1.8
260,029 + 12020 mRNA_3652 0.70 -0.9
260,045 + 12020 mRNA_3652 0.72 -2.0
260,322 - -0.5
260,324 + 0.5
260,329 - 1.2
260,330 + 0.5
260,335 + 1.4
260,336 + -0.3
260,340 + -0.5
260,458 - 0.1
260,490 + -1.0
260,498 + -1.7
260,517 + -1.4
260,620 - -1.4
260,620 - -0.2
260,659 + -1.0
260,772 + 12021 mRNA_3653 0.11 -4.8
260,779 + 12021 mRNA_3653 0.11 1.3
260,781 + 12021 mRNA_3653 0.11 -2.5
260,787 + 12021 mRNA_3653 0.11 0.6
260,792 + 12021 mRNA_3653 0.11 -1.2
260,816 + 12021 mRNA_3653 0.12 0.9
260,928 - 12021 mRNA_3653 0.15 -0.9
260,947 + 12021 mRNA_3653 0.16 -3.1
261,105 + 12021 mRNA_3653 0.20 1.2
261,479 + 12021 mRNA_3653 0.31 -2.4
261,643 + 12021 mRNA_3653 0.35 0.0
261,662 - 12021 mRNA_3653 0.36 -0.7
262,047 - 12021 mRNA_3653 0.47 -0.5
262,056 - 12021 mRNA_3653 0.47 1.0
262,325 + 12021 mRNA_3653 0.55 -0.3
262,481 - 12021 mRNA_3653 0.59 -2.1
262,768 + 12021 mRNA_3653 0.67 -0.2
263,042 - 12021 mRNA_3653 0.75 0.2
263,222 + 12021 mRNA_3653 0.80 0.6
263,645 - 0.5
263,805 + 0.3
263,816 + -0.1
263,914 + -1.9
263,930 + -1.1
263,944 - 0.2
264,093 + 1.2
264,098 + -0.5
264,106 + -0.1
264,108 + -0.3
264,110 + 2.4
264,117 + 0.6
264,122 + 1.1
264,169 - 0.4
264,308 - 1.3
264,312 - -0.6
264,325 - 0.8
264,332 + -0.1
264,332 - -1.4
264,334 + 0.1
264,399 - 0.7
264,459 + 0.2
264,462 + -0.4
264,466 - -0.5
264,466 - -0.6
264,467 + -1.3
264,479 - 1.6
264,575 - 0.5
264,585 - -0.2
264,599 + 0.1
264,599 - -0.6
264,601 + -0.4
264,603 + 1.3
264,619 - -1.1
264,633 - -0.9
264,656 + -0.9
264,668 - 0.3
264,744 - 1.4
264,829 - -0.7
264,891 + -0.3
264,897 - 0.2