Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3652

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3651: 12019 - BLAST putative protein [Melanopsichium pennsylvanicum 4], at 258338 to 258829 12019 mRNA_3652: 12020 - K17278 PGRMC1_2 membrane-associated progesterone receptor component, at 259462 to 260271 12020 mRNA_3653: 12021 - KOG2437 Muskelin, at 260397 to 263923 12021

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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258,563 + 12019 mRNA_3651 0.46 -0.8
258,579 - 12019 mRNA_3651 0.49 -1.1
258,584 - 12019 mRNA_3651 0.50 0.9
258,588 + 12019 mRNA_3651 0.51 -3.4
258,589 + 12019 mRNA_3651 0.51 1.1
258,590 + 12019 mRNA_3651 0.51 0.3
258,876 + -0.2
258,882 - -0.2
258,982 - 0.6
259,004 - -0.2
259,010 - -1.8
259,011 + 1.0
259,110 - 0.1
259,149 - -0.1
259,306 + -0.2
259,431 - 0.7
259,459 + -0.6
259,576 - 12020 mRNA_3652 0.14 0.6
259,600 + 12020 mRNA_3652 0.17 -1.1
259,727 + 12020 mRNA_3652 0.33 -1.5
259,736 - 12020 mRNA_3652 0.34 -2.3
259,766 + 12020 mRNA_3652 0.38 0.2
259,915 + 12020 mRNA_3652 0.56 -0.1
260,019 + 12020 mRNA_3652 0.69 1.8
260,029 + 12020 mRNA_3652 0.70 -0.9
260,045 + 12020 mRNA_3652 0.72 -2.0
260,322 - -0.5
260,324 + 0.5
260,329 - 1.2
260,330 + 0.5
260,335 + 1.4
260,336 + -0.3
260,340 + -0.5
260,458 - 0.1
260,490 + -1.0
260,498 + -1.7
260,517 + -1.4
260,620 - -1.4
260,620 - -0.2
260,659 + -1.0
260,772 + 12021 mRNA_3653 0.11 -4.8
260,779 + 12021 mRNA_3653 0.11 1.3
260,781 + 12021 mRNA_3653 0.11 -2.5
260,787 + 12021 mRNA_3653 0.11 0.6
260,792 + 12021 mRNA_3653 0.11 -1.2
260,816 + 12021 mRNA_3653 0.12 0.9
260,928 - 12021 mRNA_3653 0.15 -0.9
260,947 + 12021 mRNA_3653 0.16 -3.1
261,105 + 12021 mRNA_3653 0.20 1.2