Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3650

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3649: 12017 - HMMPfam-Protein of unknown function, DUF604-PF04646, at 253942 to 255854 12017 mRNA_3650: 12018 - Hypothetical Protein, at 256801 to 258115 12018 mRNA_3651: 12019 - BLAST putative protein [Melanopsichium pennsylvanicum 4], at 258338 to 258829 12019

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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255,837 - -3.0
255,875 + 2.0
255,995 - -0.3
256,006 - -1.2
256,015 - -0.2
256,020 + 0.1
256,046 + -0.1
256,084 - 0.4
256,131 - -0.8
256,139 + -1.7
256,156 + -0.0
256,262 + 0.7
256,279 - 2.0
256,280 - -1.2
256,282 + 0.2
256,286 + -1.2
256,286 - 1.2
256,287 - 1.1
256,288 + -0.7
256,288 + 0.1
256,297 + 2.0
256,298 + -0.9
256,300 - 0.2
256,301 + 0.5
256,310 - 0.2
256,314 - 2.2
256,327 + -0.1
256,333 - -0.5
256,377 - -1.3
256,379 + 0.8
256,379 + 0.3
256,384 - 0.4
256,393 - 1.0
256,400 + 0.9
256,404 - 0.3
256,435 - -1.2
256,436 - -0.7
256,447 - 1.0
256,450 + -0.5
256,453 + -1.6
256,461 + -0.1
256,463 - 1.7
256,468 + -1.9
256,470 - -1.7
256,475 - -0.0
256,481 - 0.1
256,484 + 0.7
256,486 - 0.4
256,486 - -1.4
256,491 - 1.4
256,492 + -0.2
256,509 - 0.4
256,512 + -0.7
256,522 - 0.2
256,525 + 0.6
256,530 + -1.3
256,542 - -0.3
256,543 - 2.9
256,548 - -1.4
256,555 - -0.4
256,570 - -0.7
256,572 + 0.3
256,574 - 1.7
256,596 + 0.3
256,600 - -0.2
256,606 - 0.4
256,612 - -4.2
256,613 - -0.7
256,614 + 0.1
256,615 - 0.4
256,618 - 2.0
256,620 - 1.6
256,622 + -1.5
256,624 - -0.3
256,627 + -0.1
256,637 + -0.7
256,640 - -0.3
256,644 - -1.0
256,645 - 1.6
256,646 + -2.3
256,655 + -1.9
256,655 - -0.9
256,661 - 2.3
256,661 - 1.0
256,665 - 1.3
256,676 + -0.8
256,681 + 0.7
256,706 + 0.1
256,785 - -0.1
256,825 + -1.6
256,835 - -0.2
256,960 - 12018 mRNA_3650 0.12 0.8
256,964 - 12018 mRNA_3650 0.12 -0.1
256,966 + 12018 mRNA_3650 0.13 -1.4
256,981 + 12018 mRNA_3650 0.14 -0.5
256,993 + 12018 mRNA_3650 0.15 -1.9
256,998 + 12018 mRNA_3650 0.15 -1.6
257,090 - 12018 mRNA_3650 0.22 -0.1
257,108 + 12018 mRNA_3650 0.23 0.2
257,109 - 12018 mRNA_3650 0.23 0.9
257,118 - 12018 mRNA_3650 0.24 -1.1
257,119 - 12018 mRNA_3650 0.24 -0.9
257,119 - 12018 mRNA_3650 0.24 -0.2
257,126 - 12018 mRNA_3650 0.25 0.9
257,130 + 12018 mRNA_3650 0.25 -1.0
257,137 + 12018 mRNA_3650 0.26 -0.1
257,152 + 12018 mRNA_3650 0.27 -0.4
257,309 - 12018 mRNA_3650 0.39 -0.6
257,313 + 12018 mRNA_3650 0.39 0.7
257,317 + 12018 mRNA_3650 0.39 -1.7
257,412 + 12018 mRNA_3650 0.46 -0.5
257,579 - 12018 mRNA_3650 0.59 0.4
257,604 - 12018 mRNA_3650 0.61 -0.3
257,718 - 12018 mRNA_3650 0.70 0.2
257,736 + 12018 mRNA_3650 0.71 -1.0
257,757 + 12018 mRNA_3650 0.73 -2.4
258,299 + 0.2
258,312 + -1.1
258,459 + 12019 mRNA_3651 0.25 1.0
258,563 + 12019 mRNA_3651 0.46 -0.8
258,579 - 12019 mRNA_3651 0.49 -1.1
258,584 - 12019 mRNA_3651 0.50 0.9
258,588 + 12019 mRNA_3651 0.51 -3.4
258,589 + 12019 mRNA_3651 0.51 1.1
258,590 + 12019 mRNA_3651 0.51 0.3
258,876 + -0.2
258,882 - -0.2
258,982 - 0.6
259,004 - -0.2
259,010 - -1.8
259,011 + 1.0
259,110 - 0.1