Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3644

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3644: 12012 - Hypothetical Protein, at 242655 to 243950 12012 mRNA_3645: 12013 - K14439 SMARCAD1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1, at 244941 to 247626 12013

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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241,820 - 2.7
241,822 + 0.7
241,836 + -0.4
241,965 + 0.8
241,967 + -2.5
241,991 + 4.1
241,995 + -0.5
242,098 - 1.3
242,115 - -2.8
242,122 + 1.4
242,123 - -0.2
242,132 - -1.7
242,143 + -0.3
242,144 + 0.9
242,146 - -1.2
242,259 + -0.6
242,302 + 0.4
242,306 + 0.5
242,409 + -0.6
242,524 - -0.5
242,669 - 0.3
242,725 - -0.4
242,726 + 1.6
242,911 + 12012 mRNA_3644 0.20 -0.6
243,065 - 12012 mRNA_3644 0.32 2.9
243,127 - 12012 mRNA_3644 0.36 0.6
243,160 - 12012 mRNA_3644 0.39 1.3
243,462 + 12012 mRNA_3644 0.62 0.4
243,573 + 12012 mRNA_3644 0.71 0.3
244,103 + -0.7
244,141 - 0.2
244,152 + 0.2
244,171 - -0.7
244,285 + 0.7
244,311 + -0.9
244,327 + -2.1
244,411 + -0.4
244,423 + -1.1
244,435 - 0.6
244,443 + 0.5
244,451 + -1.3
244,576 - 2.4
244,580 + -0.1
244,587 + 0.6
244,591 - 0.5
244,593 - -0.9
244,697 - 1.7
244,722 + -0.1
244,731 + -0.6
244,734 - 0.1
244,742 + -0.9
244,753 + 1.1
244,759 + -0.4
244,763 - -2.5
244,780 + -0.6
244,784 - -3.0
244,785 + 1.2
244,886 + -0.2
244,898 - -0.4
244,949 + -0.3