Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3628

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3627: 11995 - SUPERFAMILY--SSF51110,SUPERFAMILY--SSF51126, at 199548 to 202220 11995 mRNA_3628: 11996 - K10849 ERCC1 DNA excision repair protein ERCC-1, at 202614 to 203898 11996 mRNA_3629: 11997 - Hypothetical Protein, at 203983 to 204971 11997

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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201,792 - 11995 mRNA_3627 0.84 -0.6
201,941 - 11995 mRNA_3627 0.90 1.1
201,976 - -1.3
201,976 + 0.4
202,114 - -1.7
202,243 + 0.4
202,370 + 1.0
202,374 + 0.6
202,391 - 0.2
202,395 + -0.5
202,401 + -0.0
202,409 - 0.2
202,529 - 0.7
202,539 + 0.4
202,545 - -0.1
202,548 - 0.8
202,555 - -1.2
202,557 + 0.7
202,564 - -0.2
202,613 - 1.0
202,685 - 0.6
202,687 - 1.1
202,701 + -0.4
202,747 - 11996 mRNA_3628 0.10 1.1
202,786 + 11996 mRNA_3628 0.13 2.8
202,855 + 11996 mRNA_3628 0.19 0.9
202,967 + 11996 mRNA_3628 0.27 -0.9
202,998 + 11996 mRNA_3628 0.30 0.2
203,138 - 11996 mRNA_3628 0.41 -1.9
203,147 - 11996 mRNA_3628 0.41 -0.7
203,267 + 11996 mRNA_3628 0.51 -0.8
203,724 - 11996 mRNA_3628 0.86 -1.0
203,731 - 11996 mRNA_3628 0.87 0.8
203,861 + 1.2
204,192 + 11997 mRNA_3629 0.21 0.9
204,585 - 11997 mRNA_3629 0.61 -0.9
204,704 - 11997 mRNA_3629 0.73 0.9