Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3624

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3623: 11991 - HMMPfam-RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)-PF00076,ProSiteProfiles-Eukaryotic RNA Recognition Motif (RRM) profile.-PS50102,SMART-RNA recognition motif-SM00360,SUPERFAMILY--SSF54928, at 190258 to 192689 11991 mRNA_3624: 11992 - SUPERFAMILY--SSF52047, at 193379 to 194590 11992 mRNA_3625: 11993 - K01176 AMY, amyA, malS alpha-amylase, at 194842 to 197624 11993

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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192,665 - -0.7
192,814 + 0.5
192,873 + 0.8
192,949 - -0.1
192,960 + -0.4
192,977 - 0.3
192,985 - 0.4
193,114 + -0.1
193,124 + -0.1
193,126 + 1.1
193,139 + -0.3
193,699 - 11992 mRNA_3624 0.26 -0.5
194,119 + 11992 mRNA_3624 0.61 0.6
194,560 - -0.3
194,562 + -0.5
194,752 + 0.6
194,755 - 1.3
195,196 + 11993 mRNA_3625 0.13 -2.7
195,482 + 11993 mRNA_3625 0.23 -0.0