Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3622

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3621: 11989 - K00252 GCDH, gcdH glutaryl-CoA dehydrogenase, at 183204 to 185483 11989 mRNA_3622: 11990 - KOG0254 Predicted transporter (major facilitator superfamily), at 186018 to 188381 11990

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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185,231 - 11989 mRNA_3621 0.89 1.6
185,249 + 11989 mRNA_3621 0.90 -2.1
185,400 + -1.9
185,410 + -0.4
185,523 - 3.0
185,533 - 0.4
185,533 - 0.7
185,548 - -0.8
185,548 - -1.4
185,549 - 0.9
185,553 + 0.1
185,560 + -1.5
185,564 + -0.4
185,565 - -1.6
185,567 - 0.0
185,568 + -2.1
185,570 - -0.7
185,578 + 0.3
185,578 + -0.3
185,593 - 2.8
185,593 - 0.9
185,593 - 0.6
185,594 + 0.6
185,596 + -0.3
185,601 + 1.4
185,649 - 0.5
185,661 - -0.8
185,661 - -0.1
185,662 + 0.3
185,662 + 3.3
185,666 + 0.5
185,673 - -1.8
185,677 - -0.8
185,679 + 0.7
185,696 + -0.5
185,704 + -2.3
185,712 - -0.5
185,713 + 2.2
185,727 + -0.6
185,744 - 0.4
185,763 + -0.6
185,786 - -1.1
185,816 + -1.1
185,830 + -2.5
185,833 - 0.9
185,852 - 0.3
185,855 + -0.8
185,877 + 1.6
185,885 + 0.0
185,888 + -0.9
185,888 + -0.0
185,912 - 1.3
185,920 + 2.3
185,948 + -0.3
185,963 - -0.1
185,978 - 0.3
185,979 + -1.4
185,989 + -0.7
186,026 + -0.2
186,029 + 0.0
186,122 + -0.7
186,164 - -2.1
186,196 + -1.0
186,301 - 11990 mRNA_3622 0.12 -1.6
186,328 - 11990 mRNA_3622 0.13 0.1
186,349 - 11990 mRNA_3622 0.14 -0.2
186,378 - 11990 mRNA_3622 0.15 0.1
186,538 + 11990 mRNA_3622 0.22 0.2
186,540 + 11990 mRNA_3622 0.22 1.6
186,573 - 11990 mRNA_3622 0.23 0.1
186,579 - 11990 mRNA_3622 0.24 0.8
186,599 + 11990 mRNA_3622 0.25 -0.1
186,622 - 11990 mRNA_3622 0.26 -0.3
186,645 - 11990 mRNA_3622 0.27 -1.3
186,776 + 11990 mRNA_3622 0.32 -0.0
186,789 + 11990 mRNA_3622 0.33 2.6
186,809 - 11990 mRNA_3622 0.33 -0.1
186,843 + 11990 mRNA_3622 0.35 0.9
186,861 + 11990 mRNA_3622 0.36 0.0
186,967 + 11990 mRNA_3622 0.40 -0.1
187,087 + 11990 mRNA_3622 0.45 -1.1
187,242 + 11990 mRNA_3622 0.52 0.2
187,254 + 11990 mRNA_3622 0.52 -0.9
187,358 + 11990 mRNA_3622 0.57 2.8
187,371 + 11990 mRNA_3622 0.57 1.1
187,614 - 11990 mRNA_3622 0.68 -0.0
187,650 + 11990 mRNA_3622 0.69 0.3
187,773 + 11990 mRNA_3622 0.74 0.9
187,802 - 11990 mRNA_3622 0.75 -0.5
187,806 - 11990 mRNA_3622 0.76 -0.3
187,845 + 11990 mRNA_3622 0.77 1.3
187,908 - 11990 mRNA_3622 0.80 0.4
187,911 + 11990 mRNA_3622 0.80 -2.7
188,228 - -1.3
188,425 + 0.7
188,463 + 1.9
188,486 - -0.5
188,500 + -1.6
188,508 - 0.2
188,523 + -2.5
188,546 + 2.5
188,548 + -0.2
188,549 - -0.8
188,552 + 0.1
188,553 + 2.5
188,556 - 1.8
188,557 + -1.8
188,559 - -1.7
188,570 - -0.0
188,570 - -0.2
188,572 + -1.0
188,576 - 0.8
188,591 + 0.4
188,592 - -0.0
188,593 + -0.1
188,605 + 0.8
188,612 + 0.4
188,704 - -0.2
188,705 - -1.7
188,708 - -1.9
188,709 + -1.7
188,717 + -1.3
188,718 - -0.9
188,721 + 1.9
188,721 + 1.6
188,724 - 1.1
188,725 - 0.3
188,725 - 0.1
188,730 - -0.4
188,731 + -1.8
188,732 + -0.8
188,738 + -0.9
188,749 - -0.4
188,753 + -1.8
188,782 - 1.1
188,782 - 0.6
188,784 - -0.4
188,786 + -0.5
188,791 - 0.1
188,791 + 0.2
188,803 - -1.0
188,805 - 0.6
188,809 - -1.3
188,814 - 1.8
188,815 - -0.2
188,815 - 2.3
188,816 - -0.4
188,816 - -0.2
188,816 + 0.4
188,824 + -1.5
188,831 - 1.4
188,833 + 1.1
188,836 + 0.6
188,837 - -0.1
188,841 + -0.4
188,841 - 1.7
188,844 + 0.6
188,846 + -1.5
188,862 - -0.6
188,864 + 1.0
188,872 + -0.2
188,875 - -0.1
188,876 + 0.9
188,878 + 0.1
188,887 - -0.5
188,896 - 2.8
188,896 - -0.2
188,897 - 0.4
188,903 + -0.4
188,903 + -0.9
188,906 + 1.5
188,907 + -0.2
188,908 - -0.1
188,914 + -1.3
188,921 - -2.2
188,922 - 1.6
188,934 - -0.0
188,936 - -0.4
188,936 - -0.9
188,942 - -0.2
188,943 - -0.3
188,951 - -0.0
188,962 - -0.9
189,019 + -1.9
189,075 - -1.7
189,080 - -1.2
189,082 - -0.2
189,082 + 0.0
189,100 - -2.2
189,102 + -0.3
189,106 - -0.6
189,119 + -0.6
189,119 + 2.1
189,119 - 0.5
189,124 - 0.4
189,125 + 0.4
189,125 + -0.4
189,127 + 0.3
189,132 + -0.8
189,134 + -0.3
189,158 - 0.5
189,171 + -0.2
189,171 - -2.2
189,184 - -0.1
189,186 - -0.2
189,186 - -0.2
189,187 + 0.4
189,189 + -0.7
189,190 + -1.8
189,221 + 0.5
189,222 - 0.2
189,223 + -0.5
189,232 + 1.5
189,252 - 1.5
189,260 - -0.4
189,272 - -0.5
189,292 - 1.0
189,296 - 1.0
189,304 - 1.2
189,371 + 0.5