Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3621

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3620: 11988 - K15777 DOPA 4,5-DOPA dioxygenase extradiol, at 181762 to 183020 11988 mRNA_3621: 11989 - K00252 GCDH, gcdH glutaryl-CoA dehydrogenase, at 183204 to 185483 11989 mRNA_3622: 11990 - KOG0254 Predicted transporter (major facilitator superfamily), at 186018 to 188381 11990

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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182,441 - 11988 mRNA_3620 0.54 1.3
182,732 - 11988 mRNA_3620 0.77 -0.0
182,749 + 11988 mRNA_3620 0.78 0.3
183,188 - 1.0
184,784 - 11989 mRNA_3621 0.69 0.2
184,787 - 11989 mRNA_3621 0.69 0.3
185,231 - 11989 mRNA_3621 0.89 1.6
185,249 + 11989 mRNA_3621 0.90 -2.1
185,400 + -1.9
185,410 + -0.4
185,523 - 3.0
185,533 - 0.4
185,533 - 0.7
185,548 - -0.8
185,548 - -1.4
185,549 - 0.9
185,553 + 0.1
185,560 + -1.5
185,564 + -0.4
185,565 - -1.6
185,567 - 0.0
185,568 + -2.1
185,570 - -0.7
185,578 + 0.3
185,578 + -0.3
185,593 - 2.8
185,593 - 0.9
185,593 - 0.6
185,594 + 0.6
185,596 + -0.3
185,601 + 1.4
185,649 - 0.5
185,661 - -0.8
185,661 - -0.1
185,662 + 0.3
185,662 + 3.3
185,666 + 0.5
185,673 - -1.8
185,677 - -0.8
185,679 + 0.7
185,696 + -0.5
185,704 + -2.3
185,712 - -0.5
185,713 + 2.2
185,727 + -0.6
185,744 - 0.4
185,763 + -0.6
185,786 - -1.1
185,816 + -1.1
185,830 + -2.5
185,833 - 0.9
185,852 - 0.3
185,855 + -0.8
185,877 + 1.6
185,885 + 0.0
185,888 + -0.9
185,888 + -0.0
185,912 - 1.3
185,920 + 2.3
185,948 + -0.3
185,963 - -0.1
185,978 - 0.3
185,979 + -1.4
185,989 + -0.7
186,026 + -0.2
186,029 + 0.0
186,122 + -0.7
186,164 - -2.1
186,196 + -1.0
186,301 - 11990 mRNA_3622 0.12 -1.6
186,328 - 11990 mRNA_3622 0.13 0.1
186,349 - 11990 mRNA_3622 0.14 -0.2
186,378 - 11990 mRNA_3622 0.15 0.1