Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3585

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3584: 11952 - K00122 FDH formate dehydrogenase, at 104607 to 106241 11952 mRNA_3585: 11953 - KOG1339 Aspartyl protease, at 106973 to 108703 11953

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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106,048 - 11952 mRNA_3584 0.88 0.3
106,160 - 0.1
106,325 - 0.8
106,343 - 1.2
106,344 - 0.2
106,348 + -0.6
106,352 - 1.5
106,359 + 2.2
106,362 + 0.3
106,362 + 0.1
106,373 - 2.0
106,379 + 0.5
106,380 + 0.7
106,388 + -0.2
106,397 + -0.2
106,400 - 0.5
106,412 + 0.1
106,412 - -0.6
106,416 + 1.2
106,417 + -0.8
106,441 - -1.7
106,445 + -0.3
106,459 - -0.2
106,489 + -0.5
106,490 - 0.9
106,500 - 1.6
106,505 - -0.3
106,507 + 2.0
106,511 - -1.5
106,519 + -0.4
106,541 - 0.2
106,542 + -1.1
106,555 + 0.5
106,654 + 1.8
106,799 - 0.4
106,808 - -0.3
106,822 + -1.4
107,061 - -1.0
107,107 + 0.6
107,365 - 11953 mRNA_3585 0.23 1.7
108,019 + 11953 mRNA_3585 0.60 0.5
108,816 - -1.0
108,824 + -0.9
108,860 - -0.2
109,033 + 0.0
109,088 + -1.2
109,101 - 0.1
109,112 - 0.5
109,132 - -0.3
109,191 + -0.2
109,232 + -1.0
109,253 - -0.3
109,262 - 0.0
109,360 + -1.2
109,398 - -0.2
109,398 + 0.0
109,403 + -0.9
109,410 - 1.2
109,414 + 0.7
109,432 - 2.4
109,468 - -0.0
109,470 - -0.9
109,477 + -0.4
109,547 + 0.7
109,567 + -2.2
109,574 - 0.3
109,577 + 0.3
109,585 - -0.9
109,586 - 0.7
109,623 - -0.3
109,646 + 0.8
109,666 - -0.0