Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3570

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3569: 11937 - BLAST rna recognition domain-containing protein [Colletotri..., at 72269 to 75186 11937 mRNA_3570: 11938 - HMMPfam-Eukaryotic aspartyl protease-PF00026,PRINTS-Pepsin (A1) aspartic protease family signature-PR00792,ProSitePatterns-Eukaryotic and viral aspartyl proteases active site.-PS00141,SUPERFAMILY--SSF50630, at 75276 to 76903 11938 mRNA_3571: 11939 - K03681 RRP40, EXOSC3 exosome complex component RRP40, at 77591 to 78625 11939

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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74,631 - 11937 mRNA_3569 0.81 0.1
74,771 - 11937 mRNA_3569 0.86 -0.5
74,786 - 11937 mRNA_3569 0.86 -2.5
74,794 + 11937 mRNA_3569 0.87 -0.8
74,802 - 11937 mRNA_3569 0.87 0.5
74,812 - 11937 mRNA_3569 0.87 0.9
74,840 - 11937 mRNA_3569 0.88 0.2
74,932 - 1.7
74,934 - -2.0
74,936 - 0.5
74,939 - 0.1
74,963 + -0.5
74,965 + -0.3
75,062 + -0.4
75,087 - 0.5
75,087 - 1.2
75,105 + -0.5
75,119 + 0.4
75,119 + -0.8
75,122 - 0.1
75,123 - -1.4
75,271 + 0.2
75,548 - 11938 mRNA_3570 0.17 -0.0
75,558 + 11938 mRNA_3570 0.17 -0.7
75,807 + 11938 mRNA_3570 0.33 0.5
75,994 + 11938 mRNA_3570 0.44 0.4
76,099 - 11938 mRNA_3570 0.51 0.2
76,125 + 11938 mRNA_3570 0.52 0.6
76,288 + 11938 mRNA_3570 0.62 -2.2
76,380 - 11938 mRNA_3570 0.68 1.1
76,413 + 11938 mRNA_3570 0.70 0.3
76,585 - 11938 mRNA_3570 0.80 0.2
76,851 + -2.0
76,863 + 0.6
77,105 + -0.2
77,260 - 0.3
77,608 - -2.6