Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3565

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3564: 11932 - Hypothetical Protein, at 63584 to 64390 11932 mRNA_3565: 11933 - KOG0254 Predicted transporter (major facilitator superfamily), at 64818 to 67834 11933 mRNA_3566: 11934 - HMMPfam-Opioid growth factor receptor (OGFr) conserved region-PF04664, at 68325 to 69478 11934

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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63,826 + 11932 mRNA_3564 0.30 1.2
63,842 - 11932 mRNA_3564 0.32 -0.1
63,850 + 11932 mRNA_3564 0.33 -0.3
63,914 - 11932 mRNA_3564 0.41 0.6
63,982 - 11932 mRNA_3564 0.49 -0.3
63,992 - 11932 mRNA_3564 0.51 2.1
63,996 - 11932 mRNA_3564 0.51 0.7
63,998 + 11932 mRNA_3564 0.51 0.3
64,015 + 11932 mRNA_3564 0.53 1.2
64,058 + 11932 mRNA_3564 0.59 1.1
64,095 + 11932 mRNA_3564 0.63 1.9
64,132 - 11932 mRNA_3564 0.68 3.6
64,239 - 11932 mRNA_3564 0.81 -1.5
64,242 - 11932 mRNA_3564 0.82 -0.4
64,252 + 11932 mRNA_3564 0.83 0.8
64,267 + 11932 mRNA_3564 0.85 -0.6
64,298 - 11932 mRNA_3564 0.88 0.3
64,362 - 1.1
64,392 - 0.1
64,403 - -2.0
64,416 - 0.5
64,425 - -0.7
64,518 + -0.8
64,528 + -0.1
64,575 + -0.9
64,658 + 0.5
64,699 + 0.7
64,730 + -1.3
64,733 - 1.4
64,756 - -1.1
65,032 + -1.9
65,051 + -0.6
65,056 + -0.0
65,205 - 11933 mRNA_3565 0.13 -2.8
65,389 - 11933 mRNA_3565 0.19 -0.6
65,397 + 11933 mRNA_3565 0.19 0.2
65,444 - 11933 mRNA_3565 0.21 0.8
65,457 + 11933 mRNA_3565 0.21 -1.5
65,569 - 11933 mRNA_3565 0.25 -1.2
65,586 - 11933 mRNA_3565 0.25 -3.5
65,734 - 11933 mRNA_3565 0.30 -3.3
66,001 - 11933 mRNA_3565 0.39 -0.8
66,646 + 11933 mRNA_3565 0.61 -0.3
66,769 + 11933 mRNA_3565 0.65 -3.1
67,083 + 11933 mRNA_3565 0.75 0.0
67,084 - 11933 mRNA_3565 0.75 -2.7
67,192 - 11933 mRNA_3565 0.79 -1.9
67,345 - 11933 mRNA_3565 0.84 -1.1
67,730 + 0.1
67,893 - -0.5
67,913 + 1.7
67,917 - -0.0
68,040 - -0.0
68,047 + 1.2
68,052 - -0.7
68,063 - 2.2
68,072 + 0.2
68,075 + -0.4
68,165 - 1.0
68,174 + 0.4
68,174 - -0.4
68,209 + -0.1
68,209 - 1.6
68,214 - -2.1
68,217 + 0.1
68,226 - -0.1
68,226 + -0.2
68,227 + 1.1
68,238 - 1.7
68,239 - 0.7
68,246 + 1.0
68,259 + -0.6
68,289 - -0.3
68,314 + -0.1
68,356 - 0.1
68,390 + 0.3
68,392 - -1.0
68,395 - -0.7
68,500 + 11934 mRNA_3566 0.15 -0.8
68,647 + 11934 mRNA_3566 0.28 0.7
68,665 + 11934 mRNA_3566 0.29 0.0