Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3552

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3551: 11919 - K10276 FBXL10_11, KDM2 F-box and leucine-rich repeat protein 10/11, at 28216 to 30545 11919 mRNA_3552: 11920 - K10884 XRCC6, KU70, G22P1 ATP-dependent DNA helicase 2 subunit 1, at 30770 to 33816 11920 mRNA_3553: 11921 - Hypothetical Protein, at 34390 to 35973 11921

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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29,896 + 11919 mRNA_3551 0.72 -2.1
30,066 - 11919 mRNA_3551 0.79 0.6
30,500 - 1.5
30,650 + 0.1
30,653 - -0.2
30,661 + 0.3
30,789 + -2.6
30,895 + -0.2
30,908 - 0.0
30,975 - 0.0
31,065 + -1.4
31,190 - 11920 mRNA_3552 0.14 0.5
31,377 + 11920 mRNA_3552 0.20 0.1
31,813 - 11920 mRNA_3552 0.34 -2.0
31,830 - 11920 mRNA_3552 0.35 -0.6
32,247 + 11920 mRNA_3552 0.48 0.8
32,411 - 11920 mRNA_3552 0.54 0.6
32,553 + 11920 mRNA_3552 0.59 -3.2
32,637 - 11920 mRNA_3552 0.61 -0.9
32,849 + 11920 mRNA_3552 0.68 -0.7
32,851 + 11920 mRNA_3552 0.68 -1.1
32,966 - 11920 mRNA_3552 0.72 -1.3
33,128 + 11920 mRNA_3552 0.77 -0.2
33,274 - 11920 mRNA_3552 0.82 -0.1
33,308 + 11920 mRNA_3552 0.83 1.3
33,563 + 2.5
33,870 + -1.3
33,881 + 1.0
33,881 + -0.2
33,897 + -0.4
33,904 + -0.1
34,025 - -0.9
34,032 + -0.1
34,307 + 0.4
34,332 + 1.8
34,357 - -0.3
34,398 + -0.1
34,500 + 0.4
34,728 - 11921 mRNA_3553 0.21 2.2