Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3537

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3537: 11905 - Hypothetical Protein, at 102 to 917 11905

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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2 + -0.6
2 + -1.4
2 + 2.3
2 + 0.2
2 + 0.2
2 + 0.4
2 + -1.3
14 + -0.1
26 + -1.6
36 + -1.3
39 + 1.0
42 - 0.0
50 + 0.1
50 + -0.3
50 + -0.5
53 - 1.0
57 + 1.4
59 - 0.7
103 + -1.7
104 + -0.1
112 + -0.2
117 - -0.8
120 - -1.6
140 - -0.9
141 + -1.9
146 + 0.5
150 + 1.0
199 - 11905 mRNA_3537 0.12 0.3
200 + 11905 mRNA_3537 0.12 -0.3
200 - 11905 mRNA_3537 0.12 -0.1
200 - 11905 mRNA_3537 0.12 0.2
200 - 11905 mRNA_3537 0.12 -3.0
201 - 11905 mRNA_3537 0.12 -0.0
207 + 11905 mRNA_3537 0.13 -1.7
207 + 11905 mRNA_3537 0.13 -0.3
207 + 11905 mRNA_3537 0.13 -1.5
209 + 11905 mRNA_3537 0.13 -0.1
210 + 11905 mRNA_3537 0.13 -0.1
213 + 11905 mRNA_3537 0.14 -0.7
213 + 11905 mRNA_3537 0.14 0.8
214 + 11905 mRNA_3537 0.14 2.0
214 + 11905 mRNA_3537 0.14 -0.1
218 + 11905 mRNA_3537 0.14 0.9
221 + 11905 mRNA_3537 0.15 -0.2
222 + 11905 mRNA_3537 0.15 0.0
222 + 11905 mRNA_3537 0.15 -0.0
222 + 11905 mRNA_3537 0.15 -0.2
223 - 11905 mRNA_3537 0.15 -0.6
225 - 11905 mRNA_3537 0.15 -1.2
227 - 11905 mRNA_3537 0.15 -0.4
227 + 11905 mRNA_3537 0.15 1.0
230 + 11905 mRNA_3537 0.16 -1.9
230 + 11905 mRNA_3537 0.16 0.7
246 - 11905 mRNA_3537 0.18 0.8
246 - 11905 mRNA_3537 0.18 -1.5
251 + 11905 mRNA_3537 0.18 0.2
252 + 11905 mRNA_3537 0.18 -0.3
260 + 11905 mRNA_3537 0.19 0.3
262 + 11905 mRNA_3537 0.20 0.5
265 - 11905 mRNA_3537 0.20 -0.0
272 - 11905 mRNA_3537 0.21 0.8
274 + 11905 mRNA_3537 0.21 -2.2
325 - 11905 mRNA_3537 0.27 -1.9
326 - 11905 mRNA_3537 0.27 0.3
341 + 11905 mRNA_3537 0.29 -1.3
359 + 11905 mRNA_3537 0.31 0.3
362 + 11905 mRNA_3537 0.32 1.3
367 - 11905 mRNA_3537 0.32 0.3
368 + 11905 mRNA_3537 0.33 -0.1
368 + 11905 mRNA_3537 0.33 1.0
368 + 11905 mRNA_3537 0.33 -1.1
373 + 11905 mRNA_3537 0.33 0.1
373 - 11905 mRNA_3537 0.33 0.6
373 - 11905 mRNA_3537 0.33 -0.2
379 + 11905 mRNA_3537 0.34 -0.1
380 + 11905 mRNA_3537 0.34 -0.3
417 + 11905 mRNA_3537 0.39 0.9
452 + 11905 mRNA_3537 0.43 -1.4
472 + 11905 mRNA_3537 0.45 0.8
484 + 11905 mRNA_3537 0.47 0.3
489 - 11905 mRNA_3537 0.47 0.6
503 - 11905 mRNA_3537 0.49 0.7
511 + 11905 mRNA_3537 0.50 0.5
518 + 11905 mRNA_3537 0.51 2.0
523 + 11905 mRNA_3537 0.52 -0.3
533 + 11905 mRNA_3537 0.53 -0.4
539 + 11905 mRNA_3537 0.54 -0.3
550 + 11905 mRNA_3537 0.55 0.3
579 + 11905 mRNA_3537 0.58 -0.5
638 - 11905 mRNA_3537 0.66 2.1
640 - 11905 mRNA_3537 0.66 -1.7
657 + 11905 mRNA_3537 0.68 0.1
762 - 11905 mRNA_3537 0.81 -1.9
768 + 11905 mRNA_3537 0.82 -2.2
791 - 11905 mRNA_3537 0.84 -1.2
801 + 11905 mRNA_3537 0.86 0.4
804 + 11905 mRNA_3537 0.86 -1.6
822 + 11905 mRNA_3537 0.88 -1.3
827 + 11905 mRNA_3537 0.89 0.4
842 + -0.2
842 + 0.5
845 - -0.9
962 - -0.6
990 + -2.2
1,074 + -0.1
1,080 - -0.8
1,107 + -0.8
1,110 - 1.3
1,123 + -1.6
1,143 + -0.6
1,256 - -0.1
1,278 + -0.4
1,336 + -0.5
1,371 - 1.0
1,404 - -1.8
1,429 + -1.2
1,450 + 0.1
1,528 + 0.1
1,550 + 1.6
1,647 - -0.3
1,653 + -0.6
1,661 - 0.7
1,663 + 0.6
1,719 + 1.8
1,720 + -1.9
1,760 + -2.2
1,814 - -0.9
1,902 - 1.5