Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3532

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3531: 11899 - K00604 MTFMT, fmt methionyl-tRNA formyltransferase, at 324086 to 325765 11899 mRNA_3532: 11900 - K00670 NAA30, MAK3 N-alpha-acetyltransferase 30, at 325882 to 326936 11900 mRNA_3533: 11901 - K08337 ATG7 ubiquitin-like modifier-activating enzyme ATG7, at 327096 to 329991 11901

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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325,803 + 0.1
325,811 - -0.3
325,879 + 0.3
326,136 - 11900 mRNA_3532 0.24 1.6
326,152 - 11900 mRNA_3532 0.26 -1.3
326,158 + 11900 mRNA_3532 0.26 1.0
326,167 - 11900 mRNA_3532 0.27 1.6
326,179 + 11900 mRNA_3532 0.28 0.1
326,192 - 11900 mRNA_3532 0.29 0.5
326,202 - 11900 mRNA_3532 0.30 0.2
326,249 - 11900 mRNA_3532 0.35 0.4
326,266 - 11900 mRNA_3532 0.36 -0.9
326,266 + 11900 mRNA_3532 0.36 2.5
326,274 - 11900 mRNA_3532 0.37 -0.5
326,290 + 11900 mRNA_3532 0.39 0.6
326,312 - 11900 mRNA_3532 0.41 0.4
326,326 + 11900 mRNA_3532 0.42 -0.9
326,326 + 11900 mRNA_3532 0.42 -0.5
326,326 - 11900 mRNA_3532 0.42 0.4
326,343 - 11900 mRNA_3532 0.44 1.3
326,347 + 11900 mRNA_3532 0.44 0.7
326,364 - 11900 mRNA_3532 0.46 0.4
326,365 - 11900 mRNA_3532 0.46 0.1
326,390 - 11900 mRNA_3532 0.48 0.1
326,391 + 11900 mRNA_3532 0.48 1.4
326,419 - 11900 mRNA_3532 0.51 0.0
326,426 - 11900 mRNA_3532 0.52 0.8
326,531 - 11900 mRNA_3532 0.62 -0.3
326,545 + 11900 mRNA_3532 0.63 0.2
326,554 + 11900 mRNA_3532 0.64 1.1
326,640 + 11900 mRNA_3532 0.72 -0.7
326,682 - 11900 mRNA_3532 0.76 0.7
326,835 - -0.3
326,842 + 0.4
326,973 + 1.3
327,163 + -1.0
327,533 - 11901 mRNA_3533 0.15 -0.3
327,606 - 11901 mRNA_3533 0.18 -1.6
327,901 - 11901 mRNA_3533 0.28 0.3