Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3525

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3524: 11892 - Hypothetical Protein, at 306520 to 307367 11892 mRNA_3525: 11893 - K08139 HXT MFS transporter, SP family, sugar-H+ symporter, at 307662 to 311002 11893 mRNA_3526: 11894 - K06666 TUP1 glucose repression regulatory protein TUP1, at 311726 to 314497 11894

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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306,829 + 11892 mRNA_3524 0.36 -1.2
306,840 + 11892 mRNA_3524 0.38 0.9
306,998 - 11892 mRNA_3524 0.56 1.2
307,043 + 11892 mRNA_3524 0.62 0.7
307,053 + 11892 mRNA_3524 0.63 0.2
307,084 + 11892 mRNA_3524 0.67 0.6
307,125 - 11892 mRNA_3524 0.71 0.9
307,152 + 11892 mRNA_3524 0.75 1.4
307,164 - 11892 mRNA_3524 0.76 -0.1
307,226 + 11892 mRNA_3524 0.83 0.3
307,233 - 11892 mRNA_3524 0.84 0.5
307,233 - 11892 mRNA_3524 0.84 0.7
307,243 + 11892 mRNA_3524 0.85 -2.7
307,248 + 11892 mRNA_3524 0.86 -0.5
307,257 - 11892 mRNA_3524 0.87 -0.6
307,289 + 2.0
307,351 - -0.5
307,356 + 0.3
307,367 + 0.7
307,405 + 0.3
307,407 - 0.8
307,416 - -0.4
307,456 + -0.4
307,515 - 0.5
307,769 - 1.0
307,816 - 0.3
307,904 - -0.5
307,904 - 3.7
307,905 - -0.3
307,907 - -0.1
307,908 + 0.4
307,910 + -0.5
307,919 - 0.1
307,919 - 0.8
307,937 + -1.4
308,331 - 11893 mRNA_3525 0.20 -0.6
308,369 + 11893 mRNA_3525 0.21 -0.4
308,408 + 11893 mRNA_3525 0.22 0.6
308,450 - 11893 mRNA_3525 0.24 1.1
308,485 + 11893 mRNA_3525 0.25 -0.5
308,501 + 11893 mRNA_3525 0.25 0.4
308,510 + 11893 mRNA_3525 0.25 1.2
308,511 + 11893 mRNA_3525 0.25 -3.4
308,620 + 11893 mRNA_3525 0.29 -0.3
308,679 + 11893 mRNA_3525 0.30 0.3
308,772 + 11893 mRNA_3525 0.33 0.8
309,252 + 11893 mRNA_3525 0.48 -1.4
309,258 - 11893 mRNA_3525 0.48 -1.3
309,400 + 11893 mRNA_3525 0.52 0.1
309,676 - 11893 mRNA_3525 0.60 0.9
309,745 + 11893 mRNA_3525 0.62 -2.2
310,426 - 11893 mRNA_3525 0.83 0.2
310,441 + 11893 mRNA_3525 0.83 0.9
310,702 - 1.9
310,718 + 0.2
310,847 - -2.3
310,862 + -0.2
310,863 + 0.3
310,865 + -1.4
310,884 + 1.7
310,884 - 1.2
310,888 - 1.8
310,889 + 0.4
310,892 - -0.0
310,927 + -0.4
311,062 - -0.5
311,203 + 1.4