Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3524

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3523: 11891 - K08064 NFYA nuclear transcription factor Y, alpha, at 304900 to 306087 11891 mRNA_3524: 11892 - Hypothetical Protein, at 306520 to 307367 11892 mRNA_3525: 11893 - K08139 HXT MFS transporter, SP family, sugar-H+ symporter, at 307662 to 311002 11893

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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305,701 - 11891 mRNA_3523 0.67 -0.8
305,831 - 11891 mRNA_3523 0.78 -0.8
305,995 - 0.4
306,002 + -0.7
306,456 + 0.5
306,584 + 0.4
306,829 + 11892 mRNA_3524 0.36 -1.2
306,840 + 11892 mRNA_3524 0.38 0.9
306,998 - 11892 mRNA_3524 0.56 1.2
307,043 + 11892 mRNA_3524 0.62 0.7
307,053 + 11892 mRNA_3524 0.63 0.2
307,084 + 11892 mRNA_3524 0.67 0.6
307,125 - 11892 mRNA_3524 0.71 0.9
307,152 + 11892 mRNA_3524 0.75 1.4
307,164 - 11892 mRNA_3524 0.76 -0.1
307,226 + 11892 mRNA_3524 0.83 0.3
307,233 - 11892 mRNA_3524 0.84 0.5
307,233 - 11892 mRNA_3524 0.84 0.7
307,243 + 11892 mRNA_3524 0.85 -2.7
307,248 + 11892 mRNA_3524 0.86 -0.5
307,257 - 11892 mRNA_3524 0.87 -0.6
307,289 + 2.0
307,351 - -0.5
307,356 + 0.3
307,367 + 0.7
307,405 + 0.3
307,407 - 0.8
307,416 - -0.4
307,456 + -0.4
307,515 - 0.5
307,769 - 1.0
307,816 - 0.3
307,904 - -0.5
307,904 - 3.7
307,905 - -0.3
307,907 - -0.1
307,908 + 0.4
307,910 + -0.5
307,919 - 0.1
307,919 - 0.8
307,937 + -1.4
308,331 - 11893 mRNA_3525 0.20 -0.6