Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3513

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3513: 11881 - K11718 HUGT UDP-glucose-glycoprotein glucosyltransferase, at 277755 to 283906 11881 mRNA_3514: 11882 - K18097 GCY1 glycerol 2-dehydrogenase (NADP+), at 284117 to 285391 11882

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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276,862 - 0.4
277,254 + -0.4
277,369 - -1.7
277,390 + 0.5
277,545 - 1.8
277,684 - 0.7
277,685 + -0.2
277,689 - 1.5
277,692 + 1.5
277,692 + -1.0
277,717 + -0.9
277,834 - 0.6
277,855 + 0.3
277,855 + -1.0
277,976 - 0.7
277,977 + 0.6
278,000 + -0.5
278,001 - -0.7
278,119 + 0.6
278,314 + 0.4
278,419 - 11881 mRNA_3513 0.11 -1.4
278,482 - 11881 mRNA_3513 0.12 0.3
278,996 - 11881 mRNA_3513 0.20 -1.7
279,024 - 11881 mRNA_3513 0.21 -0.6
279,392 + 11881 mRNA_3513 0.27 0.5
279,605 - 11881 mRNA_3513 0.30 1.4
279,781 - 11881 mRNA_3513 0.33 0.7
280,025 - 11881 mRNA_3513 0.37 -2.6
280,355 - 11881 mRNA_3513 0.42 -0.0
280,655 - 11881 mRNA_3513 0.47 -1.8
280,916 - 11881 mRNA_3513 0.51 0.9
281,381 + 11881 mRNA_3513 0.59 0.7
281,517 - 11881 mRNA_3513 0.61 0.2
281,762 - 11881 mRNA_3513 0.65 -1.7
281,802 - 11881 mRNA_3513 0.66 -0.5
282,022 + 11881 mRNA_3513 0.69 -0.2
282,245 - 11881 mRNA_3513 0.73 2.5
282,431 - 11881 mRNA_3513 0.76 -0.1
282,672 - 11881 mRNA_3513 0.80 -0.2
282,905 + 11881 mRNA_3513 0.84 1.5
282,941 - 11881 mRNA_3513 0.84 1.0
283,960 + -0.3
283,975 - 1.0
283,992 + 0.5
284,009 - -1.4
284,026 + 0.3
284,148 + 0.1
284,150 - -3.7
284,180 - -0.0
284,190 + 1.9
284,192 - 0.8
284,225 + 0.3
284,313 + 11882 mRNA_3514 0.15 1.0
284,406 + 11882 mRNA_3514 0.23 -1.8
284,442 - 11882 mRNA_3514 0.25 -0.9
284,541 - 11882 mRNA_3514 0.33 -1.0
284,564 - 11882 mRNA_3514 0.35 0.0
284,567 + 11882 mRNA_3514 0.35 -0.7
284,579 - 11882 mRNA_3514 0.36 2.8
284,580 + 11882 mRNA_3514 0.36 1.2
284,598 + 11882 mRNA_3514 0.38 -0.6
284,718 - 11882 mRNA_3514 0.47 -1.4