Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3508

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3507: 11875 - K12251 aguB N-carbamoylputrescine amidase, at 260634 to 261961 11875 mRNA_3508: 11876 - K00273 DAO, aao D-amino-acid oxidase, at 262160 to 263731 11876 mRNA_3509: 11877 - K01464 DPYS, dht, hydA dihydropyrimidinase, at 263913 to 265913 11877

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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261,223 + 11875 mRNA_3507 0.44 0.9
261,476 + 11875 mRNA_3507 0.63 0.4
261,525 - 11875 mRNA_3507 0.67 0.5
261,664 + 11875 mRNA_3507 0.78 0.0
262,069 - 0.0
262,210 - -0.2
262,247 + -0.1
262,366 - 11876 mRNA_3508 0.13 0.3
262,526 - 11876 mRNA_3508 0.23 -1.0
262,529 + 11876 mRNA_3508 0.23 0.8
262,544 + 11876 mRNA_3508 0.24 -2.5
262,676 + 11876 mRNA_3508 0.33 -1.6
263,057 - 11876 mRNA_3508 0.57 -1.7
263,204 - 11876 mRNA_3508 0.66 -0.1
263,539 + 11876 mRNA_3508 0.88 -1.0
263,561 + 11876 mRNA_3508 0.89 0.5
263,674 + -0.7
263,703 + 0.1
263,885 - 0.6
263,944 - -0.8
263,975 - -0.8
264,072 - -1.2
264,328 + 11877 mRNA_3509 0.21 -0.1
264,688 + 11877 mRNA_3509 0.39 -1.1