Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3505

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3504: 11872 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 255381 to 257476 11872 mRNA_3505: 11873 - KOG3699 Cytoskeletal protein Adducin, at 257806 to 259201 11873 mRNA_3506: 11874 - HMMPfam-Asp/Glu/Hydantoin racemase-PF01177, at 259634 to 260419 11874

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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256,969 - 11872 mRNA_3504 0.76 1.2
257,081 + 11872 mRNA_3504 0.81 -0.7
257,109 + 11872 mRNA_3504 0.82 -1.2
257,126 + 11872 mRNA_3504 0.83 -0.1
257,387 - 0.8
257,395 + 0.8
257,407 + -0.2
257,548 + 0.8
257,553 - -0.7
257,555 + -1.5
257,577 - -0.5
257,579 + -2.0
257,699 - -1.8
258,002 - 11873 mRNA_3505 0.14 1.3
258,168 - 11873 mRNA_3505 0.26 0.5
258,199 - 11873 mRNA_3505 0.28 0.8
258,295 - 11873 mRNA_3505 0.35 0.9
259,139 - -1.4
259,274 - -0.2
259,288 + -0.7
259,288 + -0.4
259,307 + -0.0
259,314 - -2.2
259,315 + -0.1
259,414 + 0.5
259,437 - 0.7
259,594 + 2.4
259,893 - 11874 mRNA_3506 0.33 0.2
260,009 + 11874 mRNA_3506 0.48 0.8
260,042 - 11874 mRNA_3506 0.52 0.2
260,062 + 11874 mRNA_3506 0.54 -1.0