Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3489

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3489: 11857 - BLAST NADH-ubiquinone oxidoreductase, 17.2kDa subunit [..., at 226345 to 227373 11857 mRNA_3490: 11858 - K05236 COPA, RET1 coatomer subunit alpha, at 227582 to 231954 11858

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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225,354 + 1.0
225,572 - 0.5
225,757 + -0.4
225,774 + 2.1
225,876 + -0.4
226,021 + -2.0
226,035 - 0.4
226,038 - 0.1
226,041 + 0.1
226,150 - -1.6
226,155 - 0.2
226,186 + 1.3
226,283 + -1.9
226,289 - 0.4
226,311 - -2.0
226,316 + 1.2
226,321 + -0.7
226,349 + 0.4
226,368 - -2.1
226,460 + 11857 mRNA_3489 0.11 -0.6
227,337 - 0.2
227,355 + 1.1
227,371 + -0.3
227,558 + -0.0