Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3487

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3486: 11854 - K04563 CDC28, CDC2 cyclin-dependent kinase, at 218706 to 220470 11854 mRNA_3487: 11855 - Hypothetical Protein, at 221042 to 223920 11855 mRNA_3488: 11856 - Hypothetical Protein, at 224405 to 225242 11856

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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220,649 - 2.4
220,734 - 0.1
220,826 + -1.3
221,104 - -0.1
221,132 - -2.2
221,221 - 0.3
221,458 + 11855 mRNA_3487 0.14 0.4
221,495 + 11855 mRNA_3487 0.16 0.6
221,640 - 11855 mRNA_3487 0.21 -1.2
221,939 + 11855 mRNA_3487 0.31 -0.2
222,057 - 11855 mRNA_3487 0.35 0.8
222,378 + 11855 mRNA_3487 0.46 -0.4
222,385 - 11855 mRNA_3487 0.47 -1.3
222,420 + 11855 mRNA_3487 0.48 -1.9
222,488 - 11855 mRNA_3487 0.50 -0.7
222,548 + 11855 mRNA_3487 0.52 1.0
222,734 + 11855 mRNA_3487 0.59 0.2
222,826 - 11855 mRNA_3487 0.62 -0.3
222,960 + 11855 mRNA_3487 0.67 0.6
223,425 - 11855 mRNA_3487 0.83 -0.3
223,559 - 11855 mRNA_3487 0.87 0.0
223,712 + -0.3
224,189 + -2.0
224,585 - 11856 mRNA_3488 0.21 1.4
224,590 - 11856 mRNA_3488 0.22 0.1
224,598 + 11856 mRNA_3488 0.23 -0.7
224,654 + 11856 mRNA_3488 0.30 -0.9
224,774 + 11856 mRNA_3488 0.44 -0.2
224,869 - 11856 mRNA_3488 0.55 1.8