Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3479

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3478: 11846 - SUPERFAMILY--SSF56112, at 204722 to 206830 11846 mRNA_3479: 11847 - SUPERFAMILY--SSF46934, at 206991 to 209346 11847 mRNA_3480: 11848 - K02180 BUB3 cell cycle arrest protein BUB3, at 209543 to 211018 11848

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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206,072 + 11846 mRNA_3478 0.64 0.5
206,076 + 11846 mRNA_3478 0.64 0.3
206,385 - 11846 mRNA_3478 0.79 -1.4
206,599 + 11846 mRNA_3478 0.89 0.3
206,601 + 11846 mRNA_3478 0.89 0.3
206,641 + -0.4
206,774 - 0.2
206,814 - 1.6
206,856 + 0.9
206,896 - -3.1
206,899 - 0.2
206,914 - 0.5
206,915 - 1.1
206,916 + -1.4
206,924 + -1.1
206,939 + -0.3
207,042 - 0.4
207,049 - 0.7
207,052 + 0.1
207,067 + -2.7
207,205 - 2.9
207,358 - 11847 mRNA_3479 0.16 0.4
207,360 + 11847 mRNA_3479 0.16 -1.6
207,735 - 11847 mRNA_3479 0.32 -0.6
207,762 - 11847 mRNA_3479 0.33 0.5
207,789 - 11847 mRNA_3479 0.34 0.1
207,904 - 11847 mRNA_3479 0.39 0.8
208,064 - 11847 mRNA_3479 0.46 0.6
208,353 + 11847 mRNA_3479 0.58 -1.4
208,360 + 11847 mRNA_3479 0.58 1.2
208,508 + 11847 mRNA_3479 0.64 -1.8
208,552 + 11847 mRNA_3479 0.66 0.6
208,934 + 11847 mRNA_3479 0.82 2.1
209,085 + 11847 mRNA_3479 0.89 2.6
209,370 + 0.1
209,374 + 0.4
209,495 + -1.5
209,524 + 0.2