Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3470

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3469: 11837 - K07512 MECR, NRBF1 mitochondrial trans-2-enoyl-CoA reductase, at 177477 to 179110 11837 mRNA_3470: 11838 - KOG1492 C3H1-type Zn-finger protein, at 179330 to 181535 11838 mRNA_3471: 11839 - Interpro Transcription-silencing protein, cryptic loci regulator Clr2 Transcription-silencing protein Clr2, at 181846 to 184835 11839

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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178,347 - 11837 mRNA_3469 0.53 -0.9
178,533 - 11837 mRNA_3469 0.65 1.7
178,533 + 11837 mRNA_3469 0.65 0.2
178,545 + 11837 mRNA_3469 0.65 -0.5
178,794 + 11837 mRNA_3469 0.81 -0.4
179,240 + 0.1
179,362 + 1.7
179,366 - 0.3
179,389 + 0.2
179,390 - 0.2
179,519 - -0.3
179,554 + 11838 mRNA_3470 0.10 0.5
180,520 + 11838 mRNA_3470 0.54 -0.2
180,563 + 11838 mRNA_3470 0.56 -0.3
180,750 + 11838 mRNA_3470 0.64 -2.1
181,131 + 11838 mRNA_3470 0.82 -2.7
181,582 - -0.9
181,716 - 1.6
181,869 - -0.8
181,895 + 0.4
182,180 + 11839 mRNA_3471 0.11 -0.9
182,183 - 11839 mRNA_3471 0.11 2.3
182,191 - 11839 mRNA_3471 0.12 0.5
182,192 - 11839 mRNA_3471 0.12 -0.0
182,243 - 11839 mRNA_3471 0.13 -0.3
182,312 + 11839 mRNA_3471 0.16 0.8
182,326 + 11839 mRNA_3471 0.16 0.4
182,342 + 11839 mRNA_3471 0.17 -0.2