Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3462

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3461: 11829 - KOG1217 Fibrillins and related proteins containing Ca2+-binding EGF-like domains, at 154218 to 156143 11829 mRNA_3462: 11830 - K17978 NUM1 nuclear migration protein NUM1, at 156661 to 162747 11830 mRNA_3463: 11831 - Hypothetical Protein, at 163497 to 164279 11831

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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155,765 + 11829 mRNA_3461 0.80 0.3
155,847 - 11829 mRNA_3461 0.85 -1.7
156,002 + -0.3
156,017 + -0.7
156,019 - 1.9
156,054 + 2.2
156,226 - 0.2
156,308 + -0.3
156,316 - 0.0
156,317 + 1.8
156,320 + 0.4
156,476 + 0.9
159,455 + 11830 mRNA_3462 0.46 -0.7
160,790 + 11830 mRNA_3462 0.68 -0.9
162,273 - 1.9
162,281 + -0.5
162,963 + 0.4
163,104 - -1.1
163,108 - -1.1
163,122 - -2.4
163,243 - -0.7
163,265 - 0.5
163,270 - 0.6
163,270 - 0.4
163,272 + -1.4
163,274 - 1.0
163,274 + 0.1
163,275 + -1.9
163,419 - 0.7
163,422 + -0.7
163,437 + 1.3
163,440 + 0.3
163,560 + -0.5
163,566 + 0.4
163,606 - 11831 mRNA_3463 0.14 0.6
163,714 - 11831 mRNA_3463 0.28 2.7
163,725 - 11831 mRNA_3463 0.29 -1.3