Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3460

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3459: 11827 - ProSiteProfiles-Src homology 3 (SH3) domain profile.-PS50002,SMART-Src homology 3 domains-SM00326,SUPERFAMILY--SSF50044, at 147794 to 151467 11827 mRNA_3460: 11828 - HMMPfam-Fasciclin domain-PF02469,SUPERFAMILY--SSF82153, at 151624 to 153827 11828 mRNA_3461: 11829 - KOG1217 Fibrillins and related proteins containing Ca2+-binding EGF-like domains, at 154218 to 156143 11829

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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150,641 - 11827 mRNA_3459 0.77 -0.5
150,671 - 11827 mRNA_3459 0.78 1.4
150,794 - 11827 mRNA_3459 0.82 -0.5
150,834 - 11827 mRNA_3459 0.83 0.2
150,913 - 11827 mRNA_3459 0.85 0.6
150,916 + 11827 mRNA_3459 0.85 1.0
150,943 + 11827 mRNA_3459 0.86 1.7
151,047 + 11827 mRNA_3459 0.89 0.9
151,093 - 11827 mRNA_3459 0.90 0.6
151,172 + 0.3
151,281 - -0.6
151,391 - 0.4
151,395 - -0.6
151,397 - -0.9
151,403 - -1.5
151,411 - -0.7
151,434 + 1.0
151,520 + 0.4
151,525 + 1.6
151,529 + 0.2
151,559 + -0.4
151,564 + 1.0
151,568 + 0.1
151,570 + -0.8
151,574 + 1.4
151,710 + -0.3
151,714 - -0.7
151,866 + 11828 mRNA_3460 0.11 0.5
152,018 - 11828 mRNA_3460 0.18 -0.0
152,362 - 11828 mRNA_3460 0.33 -0.1
152,510 + 11828 mRNA_3460 0.40 0.2
152,866 - 11828 mRNA_3460 0.56 0.1
153,141 - 11828 mRNA_3460 0.69 1.0
153,141 - 11828 mRNA_3460 0.69 -1.1
153,147 + 11828 mRNA_3460 0.69 0.4
153,204 - 11828 mRNA_3460 0.72 0.1
153,331 - 11828 mRNA_3460 0.77 1.1
153,332 + 11828 mRNA_3460 0.77 0.4
153,334 + 11828 mRNA_3460 0.78 0.2
153,344 - 11828 mRNA_3460 0.78 -0.3
153,345 - 11828 mRNA_3460 0.78 0.8
153,477 + 11828 mRNA_3460 0.84 0.7
153,517 + 11828 mRNA_3460 0.86 -0.1
153,525 + 11828 mRNA_3460 0.86 0.8
153,646 + 1.7
153,753 - 1.6
153,775 - -0.3
153,793 - 3.3
153,801 - -0.2
153,808 - -0.5
153,909 - -0.1
153,916 + 0.8
153,939 - 0.5
154,078 + -1.5
154,215 + 1.0
154,351 - 0.3
154,369 - -0.3
154,376 + 0.4