Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3451

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3450: 11818 - K20131 RABGEF1 Rab5 GDP/GTP exchange factor, at 129414 to 132360 11818 mRNA_3451: 11819 - HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SMART-Fungal specific transcription factor domain-SM00906,SUPERFAMILY--SSF57701, at 132983 to 136040 11819 mRNA_3452: 11820 - HMMPfam-Protein of unknown function (DUF2454)-PF10521,SUPERFAMILY--SSF48371, at 136126 to 138036 11820

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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132,130 + -1.0
132,275 - 0.2
132,304 + -1.2
132,411 + -1.0
132,434 + -0.6
132,571 - -0.4
132,571 - -1.6
132,578 + -1.0
132,587 - 0.4
132,712 - 0.1
132,735 - 0.0
132,869 - -2.2
132,874 + -0.5
132,879 + -1.0
132,889 - -2.0
133,039 + 0.3
133,041 + -0.4
133,042 - 0.7
133,444 - 11819 mRNA_3451 0.15 -1.9
133,483 - 11819 mRNA_3451 0.16 1.5
133,484 - 11819 mRNA_3451 0.16 -0.0
133,502 + 11819 mRNA_3451 0.17 0.3
133,633 + 11819 mRNA_3451 0.21 0.9
133,654 - 11819 mRNA_3451 0.22 0.3
134,070 - 11819 mRNA_3451 0.36 0.3
134,169 + 11819 mRNA_3451 0.39 -2.0
134,226 - 11819 mRNA_3451 0.41 -0.2
134,230 - 11819 mRNA_3451 0.41 1.8
134,653 + 11819 mRNA_3451 0.55 -0.2
134,666 - 11819 mRNA_3451 0.55 1.1
135,825 - 0.2
135,858 + -2.4
135,962 - 2.4