Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3431

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3430: 11798 - Hypothetical Protein, at 81829 to 82404 11798 mRNA_3431: 11799 - K11155 DGAT1 diacylglycerol O-acyltransferase 1, at 82671 to 85458 11799

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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82,311 + 11798 mRNA_3430 0.84 -0.2
82,319 - 11798 mRNA_3430 0.85 0.7
82,322 + 11798 mRNA_3430 0.86 -1.4
82,326 - 11798 mRNA_3430 0.86 -0.1
82,328 - 11798 mRNA_3430 0.87 -0.3
82,331 - 11798 mRNA_3430 0.87 1.6
82,348 - -2.8
82,360 + 0.3
82,373 + -0.4
82,491 - 0.0
82,496 + -2.0
82,499 + -1.0
82,509 + -0.6
82,513 + 0.3
82,513 - 0.9
82,568 - 2.6
82,583 + -0.0
82,593 - 0.8
82,594 - 0.4
82,610 - 0.6
82,633 + -0.5
82,638 + -1.7
82,645 + 1.9
82,652 - -1.6
82,677 + -1.0
82,760 - -2.5
82,781 + 0.4
82,784 - 2.1
82,784 + -0.4
82,785 + -1.8
82,812 - 0.4
83,247 + 11799 mRNA_3431 0.21 -1.3
83,530 - 11799 mRNA_3431 0.31 -1.4
83,677 + 11799 mRNA_3431 0.36 1.1
83,965 + 11799 mRNA_3431 0.46 0.6
84,202 + 11799 mRNA_3431 0.55 -0.1
84,693 + 11799 mRNA_3431 0.73 0.2
84,832 + 11799 mRNA_3431 0.78 -0.7
84,836 - 11799 mRNA_3431 0.78 -0.2
84,959 + 11799 mRNA_3431 0.82 0.2
85,139 + 11799 mRNA_3431 0.89 0.9
85,527 - -0.5
85,532 - -0.9
85,534 + 0.9
85,537 - 0.9
85,552 - 0.8
85,566 + -1.1
85,590 - 0.4
85,677 - 0.2
85,680 - -0.0
85,713 + 0.2
85,728 + -0.6
85,756 - -0.3
85,937 - -0.4
85,979 - 2.6
85,999 - 1.5
86,004 + -0.3
86,133 + -0.8
86,253 + 0.4
86,256 - 0.3
86,280 + 1.0
86,285 - 0.5