Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3426

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3425: 11793 - K00789 metK S-adenosylmethionine synthetase, at 67905 to 69207 11793 mRNA_3426: 11794 - K08498 STX6 syntaxin 6, at 69287 to 70405 11794 mRNA_3427: 11795 - HMMPfam-Domain of unknown function (DUF1996)-PF09362, at 70674 to 72222 11795

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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68,610 + 11793 mRNA_3425 0.54 1.0
68,785 + 11793 mRNA_3425 0.68 0.6
68,918 + 11793 mRNA_3425 0.78 -0.3
68,932 + 11793 mRNA_3425 0.79 0.1
68,942 - 11793 mRNA_3425 0.80 -0.3
68,969 - 11793 mRNA_3425 0.82 0.4
69,111 + 0.7
69,117 + 1.4
69,130 - 0.9
69,134 + -0.5
69,153 + -0.3
69,254 + 1.2
69,257 + 2.3
69,423 - 11794 mRNA_3426 0.12 -0.0
69,569 - 11794 mRNA_3426 0.25 0.1
69,581 - 11794 mRNA_3426 0.26 -3.1
69,728 + 11794 mRNA_3426 0.39 -3.1
69,813 - 11794 mRNA_3426 0.47 -0.2
69,820 + 11794 mRNA_3426 0.48 0.3
69,867 + 11794 mRNA_3426 0.52 -0.9
69,896 - 11794 mRNA_3426 0.54 0.3
69,896 - 11794 mRNA_3426 0.54 -1.2
69,909 + 11794 mRNA_3426 0.56 1.2
70,282 - 11794 mRNA_3426 0.89 -2.0
70,459 - 1.0
70,576 + -0.2
70,854 - 11795 mRNA_3427 0.12 1.6
70,870 + 11795 mRNA_3427 0.13 -0.9
70,911 - 11795 mRNA_3427 0.15 -2.8
71,324 + 11795 mRNA_3427 0.42 0.2
71,329 - 11795 mRNA_3427 0.42 -0.4