Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3419

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3419: 11787 - K01120 cpdP 3',5'-cyclic-nucleotide phosphodiesterase, at 50010 to 53314 11787 mRNA_3420: 11788 - HMMPfam-ATP dependent DNA ligase domain-PF01068,HMMPfam-DNA ligase N terminus-PF04675,ProSiteProfiles-ATP-dependent DNA ligase family profile.-PS50160,SUPERFAMILY--SSF56091, at 53705 to 57912 11788

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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49,097 - 0.3
49,103 + -2.1
49,180 + 0.5
49,194 - 1.2
49,195 + 0.8
49,214 + 0.2
49,325 - 1.0
49,349 - -0.5
49,371 + 1.1
49,372 + -1.5
49,376 - -0.2
49,376 - 0.5
49,378 - -1.6
49,378 - 1.5
49,379 - 1.0
49,384 + -1.5
49,387 + -1.4
49,393 - -0.0
49,396 - 0.6
49,398 + -2.1
49,400 + 0.3
49,402 + -1.7
49,406 + 1.2
49,407 + 0.6
49,409 + 2.3
49,409 + 0.6
49,420 - -0.3
49,472 - -0.4
49,496 - 0.8
49,503 - -0.4
49,505 + 1.0
49,505 + 0.3
49,508 - -0.5
49,524 + 0.6
49,527 + 0.2
49,532 - 0.3
49,534 - 1.8
49,574 + 0.1
49,582 + 1.0
49,605 + -1.8
49,610 + -0.0
49,626 - 0.2
49,626 - -0.5
49,627 - -0.2
49,627 - -0.3
49,629 + -0.7
49,638 - 0.3
49,644 + 0.7
49,663 + -1.8
49,736 - -2.1
49,754 - 0.8
49,766 - 0.3
49,776 + -0.2
49,777 - -1.0
49,784 - -1.1
49,803 - -1.6
49,926 + 0.8
49,933 + -0.9
49,935 - -0.5
49,943 + 0.2
50,075 - -0.9
50,081 - 1.0
50,084 + 0.4
50,089 + 0.8
50,116 + -0.3
50,240 + 0.3
50,240 - 0.2
50,241 + -1.9
50,247 + -1.7
50,269 - -0.8
50,273 - -0.0
50,417 + 11787 mRNA_3419 0.12 -0.2
50,555 + 11787 mRNA_3419 0.16 -0.5
50,701 + 11787 mRNA_3419 0.21 0.4
50,973 + 11787 mRNA_3419 0.29 -0.2
50,982 - 11787 mRNA_3419 0.29 0.6
51,462 - 11787 mRNA_3419 0.44 0.2
52,264 - 11787 mRNA_3419 0.68 1.0
52,421 - 11787 mRNA_3419 0.73 -0.4
52,581 - 11787 mRNA_3419 0.78 -2.3
52,610 - 11787 mRNA_3419 0.79 0.7
52,981 - 11787 mRNA_3419 0.90 1.2
53,417 - 0.4
53,602 - 0.4
53,604 - 0.1
53,609 + -0.8
53,615 - 0.7
53,615 - 0.2
53,616 - -2.5
53,624 + -0.8