Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3417

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3416: 11784 - Hypothetical Protein, at 42396 to 43510 11784 mRNA_3417: 11785 - Hypothetical Protein, at 43744 to 46912 11785 mRNA_3418: 11786 - KOG1502 Flavonol reductase/cinnamoyl-CoA reductase, at 47383 to 48909 11786

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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42,777 - 11784 mRNA_3416 0.34 1.0
42,777 + 11784 mRNA_3416 0.34 1.1
43,052 - 11784 mRNA_3416 0.59 -1.2
43,346 - 11784 mRNA_3416 0.85 1.1
44,090 + 11785 mRNA_3417 0.11 0.2
44,226 - 11785 mRNA_3417 0.15 -0.0
44,942 + 11785 mRNA_3417 0.38 -1.0
44,944 - 11785 mRNA_3417 0.38 -0.2
45,089 - 11785 mRNA_3417 0.42 1.8
45,095 + 11785 mRNA_3417 0.43 -0.8
45,112 + 11785 mRNA_3417 0.43 2.1
45,218 - 11785 mRNA_3417 0.47 -0.3
45,251 + 11785 mRNA_3417 0.48 -1.4
45,358 + 11785 mRNA_3417 0.51 0.6
45,367 + 11785 mRNA_3417 0.51 2.3
45,832 - 11785 mRNA_3417 0.66 1.0
46,108 - 11785 mRNA_3417 0.75 -0.4
46,545 - 11785 mRNA_3417 0.88 0.9
46,554 - 11785 mRNA_3417 0.89 -2.4
46,560 + 11785 mRNA_3417 0.89 0.1
46,679 - 0.6
46,689 - -0.4
46,695 - -0.2
46,983 - 0.7
46,989 - 0.2
46,998 + -2.1
47,100 + 0.7
47,112 + -1.8
47,138 - -0.8
47,157 - -0.1
47,157 + -1.1
47,159 + -0.0
47,161 + -0.7
47,267 - -0.4
47,270 + 0.5
47,277 + -1.8
47,299 + 0.5
47,301 + 1.1
47,308 - -1.0
47,308 - -1.0
47,312 + 0.3
47,445 + -0.6