Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3409

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3408: 11776 - K00012 UGDH, ugd UDPglucose 6-dehydrogenase, at 18200 to 20454 11776 mRNA_3409: 11777 - K05658 ABCB1, CD243 ATP-binding cassette, subfamily B (MDR/TAP), member 1, at 20794 to 26649 11777 mRNA_3410: 11778 - BLAST allergen [Malassezia sympodialis ATCC 42132], at 27190 to 28187 11778

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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20,780 + 0.3
20,827 - -0.9
20,867 + -1.6
20,938 - 0.6
21,514 - 11777 mRNA_3409 0.12 -0.2
21,825 + 11777 mRNA_3409 0.18 -0.5
21,826 + 11777 mRNA_3409 0.18 -3.1
21,927 + 11777 mRNA_3409 0.19 -0.4
21,952 + 11777 mRNA_3409 0.20 -0.3
21,956 + 11777 mRNA_3409 0.20 0.2
22,176 + 11777 mRNA_3409 0.24 0.7
22,259 - 11777 mRNA_3409 0.25 0.7
22,406 - 11777 mRNA_3409 0.28 0.4
22,540 + 11777 mRNA_3409 0.30 0.4
22,585 - 11777 mRNA_3409 0.31 0.1
22,681 - 11777 mRNA_3409 0.32 -0.1
23,218 + 11777 mRNA_3409 0.41 0.5
23,523 + 11777 mRNA_3409 0.47 -1.1
23,688 + 11777 mRNA_3409 0.49 1.7
23,858 - 11777 mRNA_3409 0.52 -1.4
24,136 - 11777 mRNA_3409 0.57 0.4
24,233 + 11777 mRNA_3409 0.59 0.6
24,554 + 11777 mRNA_3409 0.64 2.3
24,862 - 11777 mRNA_3409 0.69 0.9
25,281 - 11777 mRNA_3409 0.77 -0.2
25,657 + 11777 mRNA_3409 0.83 0.4
25,946 + 11777 mRNA_3409 0.88 -0.2
26,269 + -0.2
26,289 + -1.8
26,293 + -0.5
26,306 + -1.2
26,435 - 1.9
26,460 + 1.6
26,543 + 1.4
26,559 - 0.5
26,572 + -0.3
26,589 - 0.7
26,590 + -1.9
26,596 + -1.5
26,602 + 2.4
26,621 - -0.2
26,640 - -1.7
26,645 + 0.8
26,647 - 1.0
26,654 + 1.0
26,654 - 0.3
26,666 - 1.6
26,915 + 1.2
26,941 - -0.1
26,942 - -2.3
26,947 + -1.5
26,957 + 0.3
27,048 + -0.2
27,130 + -0.1
27,371 + 11778 mRNA_3410 0.18 -0.7
27,378 + 11778 mRNA_3410 0.19 -2.2
27,394 - 11778 mRNA_3410 0.20 1.2
27,403 + 11778 mRNA_3410 0.21 1.0
27,518 - 11778 mRNA_3410 0.33 0.6
27,574 - 11778 mRNA_3410 0.38 -0.2