Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3399

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3398: 11766 - Hypothetical Protein, at 580854 to 581831 11766 mRNA_3399: 11767 - KOG0733 Nuclear AAA ATPase (VCP subfamily), at 582291 to 585718 11767 mRNA_3400: 11768 - KOG3345 Uncharacterized conserved protein, at 585834 to 587522 11768

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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581,312 + 11766 mRNA_3398 0.47 -1.1
581,400 + 11766 mRNA_3398 0.56 -0.6
581,407 + 11766 mRNA_3398 0.57 -1.8
581,422 + 11766 mRNA_3398 0.58 -0.1
581,435 - 11766 mRNA_3398 0.59 2.2
581,524 + 11766 mRNA_3398 0.69 0.5
581,554 - 11766 mRNA_3398 0.72 1.8
581,570 + 11766 mRNA_3398 0.73 -0.7
581,721 + 11766 mRNA_3398 0.89 1.1
581,729 + 11766 mRNA_3398 0.89 -1.3
581,730 + 11766 mRNA_3398 0.90 -0.7
581,851 - -1.4
581,862 + 0.2
581,882 - 0.1
581,889 - 0.6
581,900 + -0.8
581,912 - -0.9
581,956 + 0.2
581,978 + -1.3
581,983 + -0.1
581,985 - 0.8
581,989 - -0.2
581,993 + 1.0
581,994 - -2.0
582,001 + 0.1
582,007 - 0.3
582,014 + 1.0
582,023 - -0.1
582,026 + 0.2
582,032 + -0.9
582,037 - -0.0
582,039 - 0.1
582,113 - 0.4
582,310 + 0.5
582,311 + 0.2
582,312 + -1.3
582,580 + -1.4
582,721 + 11767 mRNA_3399 0.13 0.3
582,753 - 11767 mRNA_3399 0.13 0.7
582,921 - 11767 mRNA_3399 0.18 0.8
582,942 - 11767 mRNA_3399 0.19 0.1
582,944 + 11767 mRNA_3399 0.19 0.6
583,018 - 11767 mRNA_3399 0.21 -2.6
583,039 + 11767 mRNA_3399 0.22 -0.0
583,172 + 11767 mRNA_3399 0.26 -0.3
583,332 + 11767 mRNA_3399 0.30 -0.1
583,333 - 11767 mRNA_3399 0.30 -0.0
583,456 - 11767 mRNA_3399 0.34 -0.1
583,457 + 11767 mRNA_3399 0.34 -0.7
583,459 - 11767 mRNA_3399 0.34 1.9
583,469 + 11767 mRNA_3399 0.34 -0.1
583,469 + 11767 mRNA_3399 0.34 1.7
583,471 + 11767 mRNA_3399 0.34 1.7
583,598 - 11767 mRNA_3399 0.38 -0.6
583,633 - 11767 mRNA_3399 0.39 -0.2
583,834 + 11767 mRNA_3399 0.45 0.3
583,931 + 11767 mRNA_3399 0.48 0.9
584,071 + 11767 mRNA_3399 0.52 0.6
584,082 + 11767 mRNA_3399 0.52 1.1
584,166 + 11767 mRNA_3399 0.55 -3.3
584,195 - 11767 mRNA_3399 0.56 1.1
584,325 - 11767 mRNA_3399 0.59 0.2
584,494 - 11767 mRNA_3399 0.64 -1.6
584,498 - 11767 mRNA_3399 0.64 0.7
584,589 + 11767 mRNA_3399 0.67 1.2
584,873 - 11767 mRNA_3399 0.75 1.2
584,957 - 11767 mRNA_3399 0.78 -0.2
585,004 - 11767 mRNA_3399 0.79 0.9
585,100 + 11767 mRNA_3399 0.82 0.6
585,100 - 11767 mRNA_3399 0.82 -0.7
585,220 + 11767 mRNA_3399 0.85 -0.6
585,303 - 11767 mRNA_3399 0.88 0.2
585,320 + 11767 mRNA_3399 0.88 0.9
585,362 + 11767 mRNA_3399 0.90 -1.1
585,451 + 0.0
585,474 - 0.9
585,514 - -0.1
585,613 - -1.0
585,629 + -0.5
585,638 + 0.7
585,670 + 0.1
585,767 + -1.0
585,777 - -0.4
585,792 - 0.9
585,803 + -0.8
586,039 - 11768 mRNA_3400 0.12 0.4