Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3392

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3391: 11759 - Hypothetical Protein, at 568755 to 569736 11759 mRNA_3392: 11760 - HMMPfam-Caffeine-induced death protein 2-PF09774, at 570084 to 570935 11760 mRNA_3393: 11761 - KOG3662 Cell division control protein/predicted DNA repair exonuclease, at 571370 to 574049 11761

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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569,180 + 11759 mRNA_3391 0.43 -0.8
569,370 + 11759 mRNA_3391 0.63 -1.2
569,477 + 11759 mRNA_3391 0.74 0.7
569,477 - 11759 mRNA_3391 0.74 0.9
569,618 + 11759 mRNA_3391 0.88 -0.0
569,639 - 1.4
569,780 - 0.4
569,781 + 1.6
569,791 + 2.2
569,795 - -0.2
569,799 - 1.1
569,803 + 1.0
569,814 - 0.8
569,860 - -0.2
569,864 + 0.9
569,877 + 1.4
569,987 - 1.4
570,007 - 1.6
570,108 - 1.3
570,281 - 11760 mRNA_3392 0.23 -1.1
570,566 - 11760 mRNA_3392 0.57 2.6
570,838 + 11760 mRNA_3392 0.88 -2.0
570,845 + 11760 mRNA_3392 0.89 1.0
570,873 - -1.1
570,874 + 0.2
570,885 - -1.6
570,982 - 0.3
570,990 - -0.1
570,990 - -0.8
570,995 + 0.9
571,109 - -1.1
571,369 + 1.6
571,413 + 0.3
571,417 - 0.5
571,442 - 2.1
571,443 + 0.2
571,601 - 1.1
571,730 + 11761 mRNA_3393 0.13 0.5
571,901 + 11761 mRNA_3393 0.20 1.1