Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3390

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3389: 11757 - K00521 E1.16.1.7 ferric-chelate reductase, at 561833 to 564101 11757 mRNA_3390: 11758 - K06617 E2.4.1.82 raffinose synthase, at 564328 to 568075 11758 mRNA_3391: 11759 - Hypothetical Protein, at 568755 to 569736 11759

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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563,338 - 11757 mRNA_3389 0.66 0.3
563,338 - 11757 mRNA_3389 0.66 0.2
564,121 - 0.1
564,220 + 0.3
564,255 - 0.4
564,469 - -1.8
564,568 + 1.0
564,648 - 1.3
564,878 + 11758 mRNA_3390 0.15 -0.2
564,934 + 11758 mRNA_3390 0.16 -0.3
564,961 - 11758 mRNA_3390 0.17 -0.6
565,205 - 11758 mRNA_3390 0.23 -1.0
565,262 - 11758 mRNA_3390 0.25 0.4
565,388 + 11758 mRNA_3390 0.28 -1.3
565,911 + 11758 mRNA_3390 0.42 -0.4
565,927 + 11758 mRNA_3390 0.43 -0.1
566,136 + 11758 mRNA_3390 0.48 2.2
566,522 - 11758 mRNA_3390 0.59 -0.1
566,528 - 11758 mRNA_3390 0.59 -2.2
566,858 + 11758 mRNA_3390 0.68 1.6
567,249 - 11758 mRNA_3390 0.78 -1.4
567,263 - 11758 mRNA_3390 0.78 0.7
567,283 - 11758 mRNA_3390 0.79 0.3
567,304 - 11758 mRNA_3390 0.79 1.1
567,414 + 11758 mRNA_3390 0.82 0.6
567,415 - 11758 mRNA_3390 0.82 -0.1
567,436 - 11758 mRNA_3390 0.83 -4.0
567,992 + -0.5
568,107 + -0.5
568,123 - 0.5
568,129 - -2.0
568,134 - 1.0
568,145 - -0.9
568,150 + 0.6
568,169 + 0.3
568,171 + 1.8
568,185 - 0.1
568,306 + -0.2
568,453 - 1.8
568,903 + 11759 mRNA_3391 0.15 -0.4
569,054 - 11759 mRNA_3391 0.30 0.9