Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3380

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3379: 11747 - Hypothetical Protein, at 537005 to 537944 11747 mRNA_3380: 11748 - KOG1650 Predicted K+/H+-antiporter, at 538274 to 541877 11748 mRNA_3381: 11749 - K06027 NSF vesicle-fusing ATPase, at 542498 to 545831 11749

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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537,282 + 11747 mRNA_3379 0.29 2.2
537,427 + 11747 mRNA_3379 0.45 2.2
537,427 + 11747 mRNA_3379 0.45 0.7
537,427 + 11747 mRNA_3379 0.45 -1.7
537,433 + 11747 mRNA_3379 0.46 -0.2
537,522 - 11747 mRNA_3379 0.55 0.4
537,557 - 11747 mRNA_3379 0.59 0.1
537,614 + 11747 mRNA_3379 0.65 0.7
537,844 - 11747 mRNA_3379 0.89 -1.4
537,850 + 11747 mRNA_3379 0.90 0.8
537,960 + -0.1
538,116 - -0.7
538,127 + 2.5
538,240 + 0.9
538,441 - -0.0
538,573 - 0.4
538,704 + 11748 mRNA_3380 0.12 -2.4
538,706 + 11748 mRNA_3380 0.12 0.0
538,715 + 11748 mRNA_3380 0.12 -0.7
538,726 - 11748 mRNA_3380 0.13 -1.3
538,835 + 11748 mRNA_3380 0.16 0.2
539,084 - 11748 mRNA_3380 0.22 -0.5
539,133 - 11748 mRNA_3380 0.24 -0.2
539,154 - 11748 mRNA_3380 0.24 0.2
539,215 + 11748 mRNA_3380 0.26 -2.0
539,250 + 11748 mRNA_3380 0.27 -1.6
539,296 - 11748 mRNA_3380 0.28 0.3
539,302 + 11748 mRNA_3380 0.29 0.5
539,354 + 11748 mRNA_3380 0.30 -2.1
539,561 + 11748 mRNA_3380 0.36 -0.4
539,700 + 11748 mRNA_3380 0.40 -0.3
539,700 + 11748 mRNA_3380 0.40 -0.5
539,701 + 11748 mRNA_3380 0.40 -2.1
539,702 - 11748 mRNA_3380 0.40 0.5
539,721 + 11748 mRNA_3380 0.40 0.0
539,737 - 11748 mRNA_3380 0.41 -0.9
539,737 - 11748 mRNA_3380 0.41 0.5
539,777 + 11748 mRNA_3380 0.42 2.3
539,864 + 11748 mRNA_3380 0.44 -0.4
539,918 - 11748 mRNA_3380 0.46 1.5
540,199 - 11748 mRNA_3380 0.53 -0.9
540,341 + 11748 mRNA_3380 0.57 1.0
540,387 + 11748 mRNA_3380 0.59 0.1
540,611 + 11748 mRNA_3380 0.65 1.5
540,689 + 11748 mRNA_3380 0.67 0.6
541,136 + 11748 mRNA_3380 0.79 -2.5
541,477 + 11748 mRNA_3380 0.89 -0.1
541,570 - -0.3
541,594 - 0.1
541,632 + -1.5
541,744 - 0.9
541,902 + -0.8
542,042 - 0.2
542,052 + 0.3
542,063 + -1.5
542,068 + -1.0
542,072 + -0.6
542,079 + 1.3
542,082 - 2.6
542,089 + -0.5
542,221 - -0.1
542,224 + -0.0
542,372 + 2.9
542,466 - -0.9
542,505 - -1.7