Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3372

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3371: 11739 - K13806 DAGL sn1-specific diacylglycerol lipase, at 516330 to 521387 11739 mRNA_3372: 11740 - K15103 UCP2_3, SLC25A8_9 solute carrier family 25 (mitochondrial uncoupling protein), member 8/9, at 522269 to 523428 11740 mRNA_3373: 11741 - K00390 cysH phosphoadenosine phosphosulfate reductase, at 523671 to 524664 11741

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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521,291 - 0.3
521,298 + 0.5
521,422 - 1.3
521,540 - 0.3
521,560 + -1.6
521,562 + 0.0
521,569 - 1.3
521,574 + 0.1
521,579 - 1.2
521,583 + 0.5
521,588 - 0.8
521,603 + -0.3
521,607 - -2.3
521,610 + 0.4
521,610 + -0.0
521,631 - -0.5
521,631 + 1.3
521,633 - 0.6
521,736 + 0.8
521,742 + -2.0
521,758 - 0.4
521,905 - -1.5
522,188 + -2.1
522,235 - 0.3
522,445 - 11740 mRNA_3372 0.15 -0.2
522,460 + 11740 mRNA_3372 0.16 1.5
522,777 - 11740 mRNA_3372 0.44 -1.6
522,808 + 11740 mRNA_3372 0.46 -1.8
522,920 + 11740 mRNA_3372 0.56 -0.7
523,191 + 11740 mRNA_3372 0.79 0.8
523,195 - 11740 mRNA_3372 0.80 2.9
523,354 + 0.2
523,536 - 1.0
523,774 - 11741 mRNA_3373 0.10 0.4
524,099 - 11741 mRNA_3373 0.43 -1.2
524,118 - 11741 mRNA_3373 0.45 1.0
524,133 + 11741 mRNA_3373 0.46 0.5