Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3350

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3349: 11717 - K13179 DDX18, HAS1 ATP-dependent RNA helicase DDX18/HAS1, at 450209 to 452145 11717 mRNA_3350: 11718 - KOG1001 Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily, at 452666 to 460645 11718 mRNA_3351: 11719 - K12196 VPS4 vacuolar protein-sorting-associated protein 4, at 461320 to 463748 11719

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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452,563 + -0.4
452,577 + -0.5
452,610 + 0.5
452,651 + 0.5
452,716 + 0.9
452,719 + -0.2
452,727 + -0.8
452,868 + 0.2
452,949 + -0.2
454,325 - 11718 mRNA_3350 0.21 -0.1
454,444 + 11718 mRNA_3350 0.22 0.6
454,576 + 11718 mRNA_3350 0.24 0.4
454,593 - 11718 mRNA_3350 0.24 -0.8
454,719 - 11718 mRNA_3350 0.26 -1.0
454,840 + 11718 mRNA_3350 0.27 -0.3
454,879 - 11718 mRNA_3350 0.28 2.0
454,966 + 11718 mRNA_3350 0.29 -0.3
454,966 + 11718 mRNA_3350 0.29 -0.3
455,037 - 11718 mRNA_3350 0.30 -0.7
455,089 + 11718 mRNA_3350 0.30 0.2
455,126 - 11718 mRNA_3350 0.31 -1.1
455,208 - 11718 mRNA_3350 0.32 1.4
455,243 - 11718 mRNA_3350 0.32 -0.9
455,254 - 11718 mRNA_3350 0.32 0.5
455,517 + 11718 mRNA_3350 0.36 -0.6
455,520 - 11718 mRNA_3350 0.36 2.0
455,562 - 11718 mRNA_3350 0.36 -1.7
455,700 - 11718 mRNA_3350 0.38 -0.2
455,723 - 11718 mRNA_3350 0.38 3.4
455,839 + 11718 mRNA_3350 0.40 -0.5
455,873 + 11718 mRNA_3350 0.40 -1.0
455,895 + 11718 mRNA_3350 0.40 1.3
455,946 + 11718 mRNA_3350 0.41 0.4
455,963 - 11718 mRNA_3350 0.41 -0.0
456,176 - 11718 mRNA_3350 0.44 -0.2
456,284 - 11718 mRNA_3350 0.45 -1.2
456,360 - 11718 mRNA_3350 0.46 -0.7
456,678 + 11718 mRNA_3350 0.50 -0.7
456,721 - 11718 mRNA_3350 0.51 0.4
456,729 + 11718 mRNA_3350 0.51 -1.7
456,788 - 11718 mRNA_3350 0.52 -1.3
457,068 - 11718 mRNA_3350 0.55 0.2
457,322 - 11718 mRNA_3350 0.58 0.2
457,488 + 11718 mRNA_3350 0.60 -0.5
457,558 + 11718 mRNA_3350 0.61 0.5
457,564 + 11718 mRNA_3350 0.61 -3.6
457,780 - 11718 mRNA_3350 0.64 -0.3
458,241 - 11718 mRNA_3350 0.70 -1.5
458,295 + 11718 mRNA_3350 0.71 -0.1
458,650 + 11718 mRNA_3350 0.75 1.9
459,031 - 11718 mRNA_3350 0.80 -0.1
459,093 + 11718 mRNA_3350 0.81 0.5
459,213 - 11718 mRNA_3350 0.82 0.1
459,226 - 11718 mRNA_3350 0.82 0.1
459,242 - 11718 mRNA_3350 0.82 0.7
459,479 - 11718 mRNA_3350 0.85 0.3
459,506 + 11718 mRNA_3350 0.86 -0.1
459,612 + 11718 mRNA_3350 0.87 -0.3
459,643 - 11718 mRNA_3350 0.87 -1.7
459,764 - 11718 mRNA_3350 0.89 0.3
459,772 + 11718 mRNA_3350 0.89 1.2
459,804 + 11718 mRNA_3350 0.89 0.4
459,833 + 11718 mRNA_3350 0.90 -0.9
459,965 + -0.6
460,082 - -0.4
460,099 + -0.4
460,100 - -1.8
460,103 - -0.7
460,107 + -0.5
460,107 + -1.1
460,394 + -0.4
460,404 - -1.0
460,630 + 0.3
460,638 + -1.0
460,673 + -0.8
460,826 + -0.1
460,826 + 0.4
460,959 - -0.8
460,962 + -1.6
460,962 + 0.7
460,986 - -0.2
460,987 + -0.4
460,990 - 0.8
461,024 + -0.8
461,245 - -0.6
461,268 - -1.8
461,272 + 0.7
461,275 - 0.9
461,283 - -0.8
461,294 - -0.1