Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3342

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3341: 11709 - K20724 TMEM33 transmembrane protein 33, at 428327 to 429727 11709 mRNA_3342: 11710 - PRINTS-Proline rich extensin signature-PR01217, at 430306 to 432208 11710

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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429,443 + 11709 mRNA_3341 0.80 1.3
429,595 + 0.1
429,635 - 2.6
429,739 - -0.1
429,746 + -1.7
429,750 + -0.3
429,753 - -1.0
429,838 + -0.3
429,954 - -0.8
430,081 + -0.5
430,093 - 1.5
430,123 + 0.5
430,202 - 0.8
430,243 + 0.1
430,703 - 11710 mRNA_3342 0.21 0.8
430,704 + 11710 mRNA_3342 0.21 0.6
430,710 - 11710 mRNA_3342 0.21 -0.1
431,150 - 11710 mRNA_3342 0.44 -0.1
431,745 + 11710 mRNA_3342 0.76 -0.8
431,762 + 11710 mRNA_3342 0.77 1.1
431,882 + 11710 mRNA_3342 0.83 -0.1
432,052 + -1.0
432,200 + 0.3
432,209 + 0.9
432,352 + -1.3
432,359 - -0.7
432,367 + 0.0
432,415 - 2.9
432,419 - 0.1
432,420 - 0.0
432,424 - 0.5
432,427 - -0.3
432,434 - 1.8