Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3338

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3338: 11706 - KOG3525 Subtilisin-like proprotein convertase, at 419190 to 423102 11706 mRNA_3339: 11707 - KOG2445 Nuclear pore complex component (sc Seh1), at 423436 to 425345 11707

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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418,201 - -2.7
418,329 - 0.0
418,479 - 1.2
418,663 + 1.2
418,781 + -0.2
419,070 - -0.5
419,351 + 0.7
419,646 + 11706 mRNA_3338 0.12 -1.6
419,724 + 11706 mRNA_3338 0.14 -0.6
419,890 + 11706 mRNA_3338 0.18 -0.2
419,982 + 11706 mRNA_3338 0.20 0.5
420,023 - 11706 mRNA_3338 0.21 -0.1
420,114 + 11706 mRNA_3338 0.24 -0.9
420,230 - 11706 mRNA_3338 0.27 0.2
421,391 + 11706 mRNA_3338 0.56 1.8
421,541 - 11706 mRNA_3338 0.60 -0.5
421,703 - 11706 mRNA_3338 0.64 0.9
421,704 - 11706 mRNA_3338 0.64 -0.9
422,037 - 11706 mRNA_3338 0.73 -0.8
422,067 - 11706 mRNA_3338 0.74 0.6
422,288 - 11706 mRNA_3338 0.79 -0.5
422,406 + 11706 mRNA_3338 0.82 -0.7
422,424 - 11706 mRNA_3338 0.83 2.2
422,600 + 11706 mRNA_3338 0.87 1.2
422,794 - 0.7
422,882 - -0.6
422,914 + 0.4
422,972 - -0.3
422,984 - 0.5
423,151 + -1.2
423,178 - 0.2
423,186 + 0.3
423,189 - -0.7
423,415 - 1.6
423,445 - 1.0
423,571 - 0.7
423,591 + -0.9
423,719 + 11707 mRNA_3339 0.15 -0.4
423,744 + 11707 mRNA_3339 0.16 -2.0
424,043 - 11707 mRNA_3339 0.32 0.2