Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3323

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3322: 11690 - HMMPfam-Ribosomal RNA-processing protein 7 (RRP7)-PF12923, at 393973 to 395198 11690 mRNA_3323: 11691 - HMMPfam-RTA1 like protein-PF04479, at 395494 to 396830 11691 mRNA_3324: 11692 - HMMPfam-RTA1 like protein-PF04479, at 397238 to 398541 11692

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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394,946 + 11690 mRNA_3322 0.79 -0.6
394,988 + 11690 mRNA_3322 0.83 -0.1
395,114 - 2.3
395,139 + 1.8
395,156 + -0.4
395,247 - -0.7
395,254 - 1.8
395,254 - -0.1
395,259 + 0.6
395,263 + -0.1
395,266 - -0.9
395,268 + 0.0
395,275 + -1.0
395,284 - 0.1
395,286 + 0.5
395,299 - 0.8
395,306 + -1.0
395,307 - -0.7
395,321 - -1.6
395,358 + 2.1
395,363 + 0.3
395,367 - 1.2
395,373 + -0.1
395,379 + 1.2
395,388 - 1.1
395,389 + -1.1
395,393 + 0.3
395,395 + -0.8
395,396 - -1.1
395,401 + -0.0
395,416 + -1.5
395,422 - -1.8
395,433 + -1.3
395,452 + 1.3
395,542 - 0.3
395,576 + -0.0
395,586 + 0.7
395,590 - 0.1
395,696 + 11691 mRNA_3323 0.15 2.3
395,707 - 11691 mRNA_3323 0.16 0.2
395,709 + 11691 mRNA_3323 0.16 -0.2
395,718 + 11691 mRNA_3323 0.17 -0.3
396,203 - 11691 mRNA_3323 0.53 1.3
396,275 - 11691 mRNA_3323 0.58 -0.3
396,446 + 11691 mRNA_3323 0.71 1.0
396,581 + 11691 mRNA_3323 0.81 -0.2
396,998 + 0.3
397,010 - -0.5
397,011 - -0.6
397,052 + 0.3
397,151 - 1.1
397,170 - 0.2
397,173 + -1.0
397,182 - -0.9
397,196 + 0.9
397,296 - 0.8
397,723 - 11692 mRNA_3324 0.37 0.2