Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3312

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3311: 11679 - K00134 GAPDH, gapA glyceraldehyde 3-phosphate dehydrogenase, at 365993 to 367448 11679 mRNA_3312: 11680 - Hypothetical Protein, at 367824 to 368675 11680

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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366,867 - 11679 mRNA_3311 0.60 0.4
366,940 + 11679 mRNA_3311 0.65 -1.1
367,077 + 11679 mRNA_3311 0.74 0.2
367,302 + 11679 mRNA_3311 0.90 1.2
367,340 + -0.2
367,394 - -1.2
367,508 - 0.6
367,517 - -0.4
367,523 - -0.7
367,529 - -0.2
367,534 - -0.5
367,550 - -1.1
367,550 + -1.1
367,835 - -0.5
368,002 - 11680 mRNA_3312 0.21 1.6
368,003 + 11680 mRNA_3312 0.21 0.5
368,431 + 11680 mRNA_3312 0.71 1.3
368,609 + -1.0
368,617 + -0.0
368,858 - -0.3
368,859 - -0.5
368,888 - 0.6
369,016 + -0.4
369,139 + -0.0
369,155 - -0.0
369,287 - 2.1
369,290 - -0.6
369,306 + 0.2
369,307 + -1.2
369,467 + 0.3
369,493 - -0.1
369,626 - 0.7