Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3281

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3280: 11648 - Hypothetical Protein, at 281870 to 282355 11648 mRNA_3281: 11649 - KOG0255 Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily), at 282571 to 284691 11649 mRNA_3282: 11650 - KOG0023 Alcohol dehydrogenase, class V, at 285167 to 286436 11650

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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281,575 - -0.5
281,671 - 0.2
281,689 - -0.1
281,690 - 1.2
281,690 - 0.1
281,692 - -0.7
281,692 - -0.1
281,692 - -0.2
281,696 - 0.4
281,696 - -0.7
281,701 + 0.1
281,712 - -0.9
281,713 - -2.1
281,713 - 2.4
281,716 + -1.6
281,718 - 0.2
281,719 - 0.8
281,719 + 0.9
281,720 + 0.1
281,729 + 0.0
281,771 + -0.5
281,876 - -0.7
281,885 - 2.1
281,886 + -0.0
281,995 - 11648 mRNA_3280 0.26 0.3
282,289 - 11648 mRNA_3280 0.86 -0.1
282,292 + 11648 mRNA_3280 0.87 0.6
282,300 - 11648 mRNA_3280 0.88 -0.2
282,301 + 11648 mRNA_3280 0.89 1.4
282,301 - 11648 mRNA_3280 0.89 -0.3
282,312 + 0.2
282,314 - 0.3
282,320 - 0.4
282,327 + -0.1
282,329 + 0.8
282,330 - -0.3
282,331 + 1.0
282,333 - 0.3
282,334 - -1.0
282,335 + 0.2
282,336 + -0.6
282,340 + -0.6
282,341 + -1.0
282,342 + -1.6
282,342 + -0.3
282,345 + 0.1
282,349 + -0.2
282,350 + -1.3
282,351 - 1.6
282,358 - 2.1
282,358 - -0.8
282,369 - 0.7
282,380 - 0.5
282,402 + 0.1
282,410 - -0.2
282,412 + 0.9
282,413 + 0.3
282,428 + 0.5
282,446 - -1.0
282,449 + -0.4
282,456 + 0.9
282,490 + -1.9
282,492 + -0.2
282,492 + -1.6
282,493 + -2.0
282,494 + -0.2
282,498 + 0.0
282,505 + -0.4
282,509 - 0.2
282,515 + 0.2
282,515 + 0.4
282,517 + -1.0
282,517 - 0.6
282,518 + 0.9
282,519 - -0.5
282,632 - -1.2
282,640 - -0.5
282,648 - 2.6
282,650 - 0.6
282,650 - -3.4
282,656 - 1.4
282,661 + 0.5
282,662 + -0.6
282,665 - 0.4
282,667 + -4.0
282,675 + 1.2
282,679 + 0.5
282,683 + 0.4
282,707 + -0.2
282,780 + -1.1
282,805 - 11649 mRNA_3281 0.11 3.3
282,813 - 11649 mRNA_3281 0.11 1.2
282,818 + 11649 mRNA_3281 0.12 -0.0
282,829 - 11649 mRNA_3281 0.12 -1.8
282,859 - 11649 mRNA_3281 0.14 -1.0
282,860 - 11649 mRNA_3281 0.14 0.3
282,870 - 11649 mRNA_3281 0.14 0.9
282,941 - 11649 mRNA_3281 0.17 0.5
282,985 - 11649 mRNA_3281 0.20 -0.2
282,995 + 11649 mRNA_3281 0.20 1.9
283,158 + 11649 mRNA_3281 0.28 -0.5
283,418 + 11649 mRNA_3281 0.40 0.1
283,453 - 11649 mRNA_3281 0.42 -0.9
283,709 - 11649 mRNA_3281 0.54 -1.3
283,716 - 11649 mRNA_3281 0.54 0.0
284,621 + -0.1
284,733 - -0.2
284,779 - 2.2
284,938 + 0.2
285,041 + 2.1
285,052 + 1.3
285,471 - 11650 mRNA_3282 0.24 -1.5
285,491 - 11650 mRNA_3282 0.26 -0.2
285,608 - 11650 mRNA_3282 0.35 -0.6