Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3274

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3273: 11641 - K13754 SLC24A6, NCKX6 solute carrier family 24 (sodium/potassium/calcium exchanger), member 6, at 259466 to 262865 11641 mRNA_3274: 11642 - K00108 betA, CHDH choline dehydrogenase, at 263216 to 265708 11642 mRNA_3275: 11643 - BLAST methyltransferase [Obba rivulosa], at 265766 to 267917 11643

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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262,716 - 0.7
262,821 - 1.0
262,834 + 0.6
262,847 - 0.7
262,852 + 0.3
262,852 + -1.9
262,894 - -0.7
262,962 + -0.4
262,964 - -1.1
262,990 + 0.2
263,032 + 2.6
263,040 - 1.3
263,049 + 1.4
263,054 - 1.6
263,131 + -2.3
263,261 + 1.4
263,261 + 0.9
263,541 + 11642 mRNA_3274 0.13 1.3
263,861 + 11642 mRNA_3274 0.26 2.9
264,150 + 11642 mRNA_3274 0.37 0.8
264,225 - 11642 mRNA_3274 0.40 0.0
264,412 - 11642 mRNA_3274 0.48 0.1
264,547 - 11642 mRNA_3274 0.53 -1.9
264,682 - 11642 mRNA_3274 0.59 -0.5
264,861 - 11642 mRNA_3274 0.66 -1.1
264,899 - 11642 mRNA_3274 0.68 -0.2
264,950 - 11642 mRNA_3274 0.70 -1.0
265,311 - 11642 mRNA_3274 0.84 -0.1
265,430 + 11642 mRNA_3274 0.89 -2.1
265,455 - 11642 mRNA_3274 0.90 0.2
265,468 + 0.1
265,536 + -0.1
265,537 - 0.3
265,549 + 0.6
265,549 + -0.6
265,649 - -0.0
265,655 - -0.6
265,658 + 0.6
265,658 + -3.1
265,666 - -0.1
265,685 - 1.6
265,689 + -0.1
265,700 - 1.1
265,705 + -0.1
265,786 - -0.8
265,818 + 1.2
265,821 + -1.1
265,824 - -0.2
265,826 + -2.1
265,827 + 0.8
265,828 + -0.9
265,835 + 0.7
265,835 + 1.0
265,836 - 1.2
265,839 - -0.3
265,839 - 1.0
265,841 + -0.7
265,845 + -2.6
265,852 + 0.2
265,853 - 0.4
265,853 - -1.3
265,855 - -0.6
265,856 + -1.4
265,856 + -1.5
265,856 - -0.5
265,866 + 0.2
265,867 + 1.4
265,868 - -0.9
265,871 - 0.3
265,872 - 0.4
265,873 + 0.8
265,874 - 0.4
265,874 + 1.5
265,875 - -1.3
265,876 - -2.2
265,878 - 2.0
265,879 - -1.5
265,881 - -1.3
265,882 - 1.2
265,883 + 0.8
265,883 + 0.3
265,889 - -0.8
265,889 - -1.9
265,892 + -0.2
265,893 + -0.8
265,893 - 0.3
265,898 - -0.3
265,899 - 0.3
265,899 + 0.3
265,901 + -1.2
265,902 + -2.5
265,907 - 2.7
265,907 - 0.0
265,910 - 0.1
265,934 - 1.5
265,947 - 0.6
265,949 - 0.3
265,949 - 0.3
265,952 - -0.6
265,952 - 0.1
265,955 + -1.8
265,956 + 0.9
265,956 + 1.9
265,969 + 1.0
265,969 + -0.9
265,983 - 11643 mRNA_3275 0.10 -0.1
265,988 + 11643 mRNA_3275 0.10 -1.2
265,995 + 11643 mRNA_3275 0.11 -2.6
266,013 - 11643 mRNA_3275 0.11 0.4
266,027 - 11643 mRNA_3275 0.12 -1.7
266,051 - 11643 mRNA_3275 0.13 1.2
266,053 - 11643 mRNA_3275 0.13 0.9
266,062 - 11643 mRNA_3275 0.14 -1.6
266,156 + 11643 mRNA_3275 0.18 -0.0
266,164 - 11643 mRNA_3275 0.18 -0.7
266,171 + 11643 mRNA_3275 0.19 0.6
266,174 - 11643 mRNA_3275 0.19 0.2
266,201 - 11643 mRNA_3275 0.20 0.5
266,209 - 11643 mRNA_3275 0.21 1.5
266,226 - 11643 mRNA_3275 0.21 -1.1
266,341 - 11643 mRNA_3275 0.27 -0.1
266,638 + 11643 mRNA_3275 0.41 -0.8