Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3238

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3237: 11605 - K10357 MYO5 myosin V, at 176488 to 184590 11605 mRNA_3238: 11606 - BLAST RNA replication protein [Rhizoctonia solani], at 184726 to 188428 11606 mRNA_3239: 11607 - K15425 PPP4R2 serine/threonine-protein phosphatase 4 regulatory subunit 2, at 188570 to 189872 11607

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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183,873 - 0.4
184,060 + -1.7
184,071 - 1.1
184,499 - -1.4
184,501 + -1.6
184,503 + 0.0
184,538 + -1.1
184,766 - -0.7
184,777 + -2.3
184,797 + -1.1
184,834 - 0.3
184,931 + -0.7
184,949 + 0.5
185,051 + -0.6
185,414 - 11606 mRNA_3238 0.19 -0.1
185,529 + 11606 mRNA_3238 0.22 -0.8
185,540 + 11606 mRNA_3238 0.22 -0.5
185,547 + 11606 mRNA_3238 0.22 -0.5
185,885 - 11606 mRNA_3238 0.31 -0.1
185,933 - 11606 mRNA_3238 0.33 0.2
185,949 + 11606 mRNA_3238 0.33 -0.8
185,966 - 11606 mRNA_3238 0.33 0.5
186,020 + 11606 mRNA_3238 0.35 -1.6
186,258 - 11606 mRNA_3238 0.41 -0.2
186,390 + 11606 mRNA_3238 0.45 -1.4
186,506 - 11606 mRNA_3238 0.48 -0.1
186,537 + 11606 mRNA_3238 0.49 0.1
186,587 - 11606 mRNA_3238 0.50 0.3
186,650 - 11606 mRNA_3238 0.52 0.1
186,730 - 11606 mRNA_3238 0.54 1.7
186,948 - 11606 mRNA_3238 0.60 1.2
187,002 + 11606 mRNA_3238 0.61 -1.3
187,014 + 11606 mRNA_3238 0.62 0.0
187,110 - 11606 mRNA_3238 0.64 -0.7
187,266 - 11606 mRNA_3238 0.69 -0.4
187,304 + 11606 mRNA_3238 0.70 -1.5
187,308 + 11606 mRNA_3238 0.70 -0.7
187,310 + 11606 mRNA_3238 0.70 -0.5
187,439 - 11606 mRNA_3238 0.73 1.4
187,714 + 11606 mRNA_3238 0.81 1.5
187,717 - 11606 mRNA_3238 0.81 1.3
187,720 + 11606 mRNA_3238 0.81 -0.1
188,288 + -0.3
188,346 + 0.5
188,674 + -1.9
188,680 - -0.7
188,738 - 11607 mRNA_3239 0.13 0.6
188,782 + 11607 mRNA_3239 0.16 -1.6
188,789 + 11607 mRNA_3239 0.17 0.4
188,792 - 11607 mRNA_3239 0.17 -0.6
188,985 + 11607 mRNA_3239 0.32 2.4
189,049 - 11607 mRNA_3239 0.37 0.1
189,207 - 11607 mRNA_3239 0.49 1.5
189,221 - 11607 mRNA_3239 0.50 1.3
189,348 + 11607 mRNA_3239 0.60 -0.0
189,385 - 11607 mRNA_3239 0.63 -0.8