Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3237

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3236: 11604 - K01755 argH, ASL argininosuccinate lyase, at 173698 to 175795 11604 mRNA_3237: 11605 - K10357 MYO5 myosin V, at 176488 to 184590 11605 mRNA_3238: 11606 - BLAST RNA replication protein [Rhizoctonia solani], at 184726 to 188428 11606

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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175,721 - -2.1
175,861 - -0.1
176,024 - -0.9
176,050 + -0.0
176,179 - -0.2
176,189 - -0.2
176,190 + 0.2
176,192 + -0.2
176,192 + 2.3
176,195 + -0.4
176,198 - 0.8
176,203 + 0.4
176,209 - -0.2
176,216 - 0.4
176,319 + 3.7
176,327 + -0.8
176,329 - 0.1
176,329 - 0.1
176,335 + -0.2
176,343 + -0.2
176,345 + -0.2
176,346 - -0.2
176,347 - 0.4
176,348 + 0.1
176,350 + 0.5
176,351 - -2.5
176,361 + 0.2
176,371 + 1.2
176,379 + 0.1
176,502 - 0.2
176,510 - 1.0
176,579 - 0.5
176,615 - 2.0
176,643 + -0.8
177,108 + 1.4
177,378 - 11605 mRNA_3237 0.11 1.0
177,417 + 11605 mRNA_3237 0.11 -0.0
177,532 + 11605 mRNA_3237 0.13 -0.8
177,642 + 11605 mRNA_3237 0.14 1.1
177,650 - 11605 mRNA_3237 0.14 2.3
178,762 + 11605 mRNA_3237 0.28 -0.5
178,933 + 11605 mRNA_3237 0.30 0.5
178,941 + 11605 mRNA_3237 0.30 1.0
179,003 - 11605 mRNA_3237 0.31 1.3
179,481 + 11605 mRNA_3237 0.37 -0.4
179,868 - 11605 mRNA_3237 0.42 0.8
179,951 + 11605 mRNA_3237 0.43 -1.7
180,518 - 11605 mRNA_3237 0.50 1.4
180,524 + 11605 mRNA_3237 0.50 -2.6
180,575 - 11605 mRNA_3237 0.50 0.7
181,225 - 11605 mRNA_3237 0.58 0.5
181,372 + 11605 mRNA_3237 0.60 -0.2
181,528 - 11605 mRNA_3237 0.62 0.1
181,796 + 11605 mRNA_3237 0.66 0.3
182,306 - 11605 mRNA_3237 0.72 1.4
182,393 + 11605 mRNA_3237 0.73 0.2
182,412 + 11605 mRNA_3237 0.73 -0.1
182,547 + 11605 mRNA_3237 0.75 -0.9
182,665 + 11605 mRNA_3237 0.76 0.4
182,675 + 11605 mRNA_3237 0.76 0.1
182,686 - 11605 mRNA_3237 0.76 -0.0
182,699 - 11605 mRNA_3237 0.77 0.4
182,724 - 11605 mRNA_3237 0.77 0.8
182,740 + 11605 mRNA_3237 0.77 0.7
182,740 + 11605 mRNA_3237 0.77 0.3
182,769 - 11605 mRNA_3237 0.78 0.6
182,772 - 11605 mRNA_3237 0.78 -0.6
182,796 - 11605 mRNA_3237 0.78 1.2
182,893 - 11605 mRNA_3237 0.79 0.1
182,895 - 11605 mRNA_3237 0.79 0.1
182,904 + 11605 mRNA_3237 0.79 0.7
183,038 + 11605 mRNA_3237 0.81 -0.3
183,056 - 11605 mRNA_3237 0.81 0.9
183,318 - 11605 mRNA_3237 0.84 -0.0
183,873 - 0.4
184,060 + -1.7
184,071 - 1.1
184,499 - -1.4
184,501 + -1.6
184,503 + 0.0
184,538 + -1.1
184,766 - -0.7
184,777 + -2.3
184,797 + -1.1
184,834 - 0.3
184,931 + -0.7
184,949 + 0.5
185,051 + -0.6
185,414 - 11606 mRNA_3238 0.19 -0.1
185,529 + 11606 mRNA_3238 0.22 -0.8
185,540 + 11606 mRNA_3238 0.22 -0.5
185,547 + 11606 mRNA_3238 0.22 -0.5