Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3233

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3232: 11600 - ProSiteProfiles-BRCT domain profile.-PS50172, at 159953 to 161045 11600 mRNA_3233: 11601 - KOG1339 Aspartyl protease, at 161469 to 163797 11601 mRNA_3234: 11602 - Hypothetical Protein, at 163979 to 166240 11602

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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161,043 + -1.0
161,050 + 0.8
161,173 - 1.1
161,175 + 1.2
161,180 + -1.0
161,207 + 1.0
161,216 + -1.2
161,277 + -0.9
161,499 + -1.8
161,569 - -1.5
161,575 + -0.0
161,599 + -1.7
161,605 + 0.0
161,606 - -0.2
161,619 + -0.4
161,678 - 0.2
161,777 - 11601 mRNA_3233 0.13 -0.3
161,794 - 11601 mRNA_3233 0.14 0.2
162,056 + 11601 mRNA_3233 0.25 1.4
162,074 + 11601 mRNA_3233 0.26 0.2
162,101 - 11601 mRNA_3233 0.27 -2.5
162,189 - 11601 mRNA_3233 0.31 0.4
162,366 - 11601 mRNA_3233 0.39 0.1
162,676 - 11601 mRNA_3233 0.52 0.2
162,780 + 11601 mRNA_3233 0.56 1.5
162,910 - 11601 mRNA_3233 0.62 -0.9
162,937 - 11601 mRNA_3233 0.63 -0.5
162,973 + 11601 mRNA_3233 0.65 -0.9
163,328 - 11601 mRNA_3233 0.80 1.8
163,399 + 11601 mRNA_3233 0.83 -0.9
163,460 - 11601 mRNA_3233 0.85 0.2
163,620 - -0.6
163,638 - -1.3
163,643 + -1.0
163,757 + -0.8
163,950 - 0.6
163,952 + 0.7
164,090 - 2.7
164,207 - 11602 mRNA_3234 0.10 -1.8
164,330 - 11602 mRNA_3234 0.16 1.2
164,520 + 11602 mRNA_3234 0.24 -0.3